Macromolecule Content

Total Structure Weight: 68.05 kDa
Atom Count: 5,235
Modelled Residue Count: 596
Deposited Residue Count: 609
Unique protein chains: 1

7ZM9

Ketosynthase domain 3 of Brevibacillus Brevis orphan BGC11

PDB DOI: 10.2210/pdb7ZM9/pdb

Classification: BIOSYNTHETIC PROTEIN
Organism(s): Brevibacillus brevis NBRC 100599
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2022-04-19 Released: 2022-09-21
Deposition Author(s): Tittes, Y.U., Herbst, D.A., Jakob, R.P., Maier, T.
Funding Organization(s): Swiss National Science Foundation

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.62 Å
R-Value Free: 0.168
R-Value Work: 0.152
R-Value Observed: 0.152

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Ketosynthase domain 3 of Brevibacillus Brevis orphan BGC11

Tittes, Y.U., Herbst, D.A., Jakob, R.P., Maier, T.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative polyketide synthase	A	609	Brevibacillus brevis NBRC 100599	Mutation(s): 0 Gene Names: BBR47_39880
UniProt
Find proteins for C0ZGQ6 (Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599)) Explore C0ZGQ6 Go to UniProtKB: C0ZGQ6
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	C0ZGQ6
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
PEG Query on PEG Download Ideal Coordinates CCD File SDF format, chain E [auth A] SDF format, chain B [auth A] SDF format, chain C [auth A] SDF format, chain D [auth A] MOL2 format, chain E [auth A] MOL2 format, chain B [auth A] MOL2 format, chain C [auth A] MOL2 format, chain D [auth A]	B [auth A], C [auth A], D [auth A], E [auth A]	DI(HYDROXYETHYL)ETHER C₄ H₁₀ O₃ MTHSVFCYNBDYFN-UHFFFAOYSA-N		Ligand Interaction
GOL Query on GOL Download Ideal Coordinates CCD File SDF format, chain F [auth A] SDF format, chain G [auth A] SDF format, chain H [auth A] MOL2 format, chain F [auth A] MOL2 format, chain G [auth A] MOL2 format, chain H [auth A]	F [auth A], G [auth A], H [auth A]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Ligand Interaction

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
CSD Query on CSD	A	L-PEPTIDE LINKING	C₃ H₇ N O₄ S		CYS

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.62 Å
R-Value Free: 0.168
R-Value Work: 0.152
R-Value Observed: 0.152
Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 126.78	α = 90
b = 92.69	β = 92.54
c = 99.27	γ = 90

Software Package:

Software Name	Purpose
XSCALE	data scaling
PHASER	phasing
PHENIX	refinement
PDB_EXTRACT	data extraction
XDS	data reduction

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2022-09-21

Deposition Author(s):

Funding Organization	Location	Grant Number
Swiss National Science Foundation	Switzerland	179323, 159696, 177084

Revision History (Full details and data files)

Version 1.0: 2022-09-21
Type: Initial release

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.