8K5U

Se-glycosyltransferase RsSenB

PDB DOI: https://doi.org/10.2210/pdb8K5U/pdb

Classification: TRANSFERASE
Organism(s): Ramlibacter sp.
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-07-24 Released: 2024-02-07
Deposition Author(s): Huang, W., Long, F.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.15 Å
R-Value Free: 0.252
R-Value Work: 0.216
R-Value Observed: 0.217

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Structure of RsSenB at 2.15 Angstroms resolution

Long, F., Huang, W.

To be published.

Macromolecule Content

Total Structure Weight: 70.38 kDa
Atom Count: 5,051
Modelled Residue Count: 636
Deposited Residue Count: 658
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Se glycosyltransferase	A, B	329	Ramlibacter sp.	Mutation(s): 0
UniProt
Find proteins for A0A923XHR8 (Ramlibacter sp) Explore A0A923XHR8 Go to UniProtKB: A0A923XHR8
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A923XHR8
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.15 Å
R-Value Free: 0.252
R-Value Work: 0.216
R-Value Observed: 0.217
Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 80.826	α = 90
b = 73.79	β = 116.11
c = 81.28	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
Blu-Ice	data collection
XDS	data reduction
Aimless	data scaling
PHENIX	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-02-07

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	--

Revision History (Full details and data files)

Version 1.0: 2024-02-07
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.