Download MendeleyNew Super-Slow Substrates as novel Sirtuin-Inhibitors
Friedrich, F., Kalbas, D., Einsle, O., Jung, M., Schutkowski, M.To be published.
8QTU
Crystal structure of human Sirt2 in complex with the super-slow substrate TNFn-3 and NAD+
- PDB DOI: https://doi.org/10.2210/pdb8QTU/pdb
- Classification: HYDROLASE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2023-10-13 Released: 2024-10-23
- Funding Organization(s): German Research Foundation (DFG)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.207
- R-Value Work: 0.184
- R-Value Observed: 0.185
Starting Model: experimental
View more details
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| NAD-dependent protein deacetylase sirtuin-2 | 304 | Homo sapiens | Mutation(s): 0 Gene Names: SIRT2, SIR2L, SIR2L2 EC: 3.5.1 (PDB Primary Data), 2.3.1 (UniProt), 2.3.1.286 (UniProt) |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q8IXJ6 (Homo sapiens) Explore Q8IXJ6 Go to UniProtKB: Q8IXJ6 | |||||
PHAROS: Q8IXJ6 GTEx: ENSG00000068903 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8IXJ6 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Peptide-based super-slow substrate TNFn-3 | 9 | Homo sapiens | Mutation(s): 0 |  | |
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAD (Subject of Investigation/LOI) Query on NAD | D [auth A] | NICOTINAMIDE-ADENINE-DINUCLEOTIDE C21 H27 N7 O14 P2 BAWFJGJZGIEFAR-NNYOXOHSSA-N |  | ||
| WWE (Subject of Investigation/LOI) Query on WWE | F [auth B] | 3-dodecylsulfanyl-3-methyl-butanoic acid C17 H34 O2 S FVOHTIJLQOWWCZ-UHFFFAOYSA-N |  | ||
| ZN Query on ZN | C [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| EDO Query on EDO | E [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| NIY Query on NIY | B | L-PEPTIDE LINKING | C9 H10 N2 O5 |  | TYR |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.207
- R-Value Work: 0.184
- R-Value Observed: 0.185
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 38.292 | α = 90 |
| b = 74.689 | β = 97.66 |
| c = 56.197 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| Aimless | data scaling |
| autoPROC | data reduction |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2024-10-23 Deposition Author(s): Friedrich, F., Kalbas, D., Meleshin, M., Einsle, O., Schutkowski, M., Jung, M.
| Funding Organization | Location | Grant Number |
|---|---|---|
| German Research Foundation (DFG) | Germany | SFB 992 |
| German Research Foundation (DFG) | Germany | 295/18-1 |
Revision History (Full details and data files)
- Version 1.0: 2024-10-23
Type: Initial release
