Crystal structure of chimeric RBD complexed with chimeric mouse ACE2
Zhang, W., Shi, K., Aihara, H., Li, F.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Angiotensin-converting enzyme 2 | 597 | Mus musculus | Mutation(s): 0  EC: 3.4.17 (UniProt), 3.4.17.23 (UniProt) | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9BYF1 (Homo sapiens) Explore Q9BYF1  Go to UniProtKB:  Q9BYF1 | |||||
PHAROS:  Q9BYF1 GTEx:  ENSG00000130234  | |||||
Find proteins for Q8R0I0 (Mus musculus) Explore Q8R0I0  Go to UniProtKB:  Q8R0I0 | |||||
IMPC:  MGI:1917258 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Groups | Q9BYF1Q8R0I0 | ||||
Glycosylation | |||||
Glycosylation Sites: 2 | Go to GlyGen: Q9BYF1-1Q8R0I0-1 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Receptor binding domain | C [auth E], D [auth F] | 217 | Severe acute respiratory syndrome coronavirus 2 | Mutation(s): 0  | |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Glycosylation | |||||
Glycosylation Sites: 1 | |||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | E [auth C], G | 3 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G15407YE GlyCosmos:  G15407YE GlyGen:  G15407YE |
Ligands 5 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | K [auth A], V [auth B], W [auth F] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
ZN Query on ZN | H [auth A], Q [auth B] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
EDO Query on EDO | J [auth A] L [auth A] M [auth A] N [auth A] O [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
CL Query on CL | I [auth A], R [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M | |||
NA Query on NA | P [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 80.142 | α = 90 |
b = 118.211 | β = 96.14 |
c = 107.86 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
STARANISO | data scaling |
XDS | data reduction |
PHENIX | phasing |
Funding Organization | Location | Grant Number |
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National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | AI089728 |
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | AI110700 |
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | GM118047 |