8V1G

plasmodium falciparum Niemann-Pick type C1-related protein bound with MMV009108

• PDB DOI: https://doi.org/10.2210/pdb8V1G/pdb
• EM Map EMD-42885: EMDB EMDataResource

• Classification: MEMBRANE PROTEIN
• Organism(s): Plasmodium falciparum 3D7
• Expression System: Homo sapiens
• Mutation(s): No 


• Deposited: 2023-11-20 Released: 2024-11-20 
• Deposition Author(s): Zhang, Z., Lyu, M.
• Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 2.98 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

plasmodium falciparum Niemann-Pick type C1-related protein bound with MMV009108

Zhang, Z., Lyu, M.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by (software)

Biological Assembly Evidence: electron microscopy

Macromolecule Content

• Total Structure Weight: 171.75 kDa 
• Atom Count: 8,166 
• Modelled Residue Count: 990 
• Deposited Residue Count: 1,470 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Niemann-Pick type C1-related protein	A	1,470	Plasmodium falciparum 3D7	Mutation(s): 0  Gene Names: PF3D7_0107500
UniProt
Find proteins for Q8I266 (Plasmodium falciparum (isolate 3D7)) Explore Q8I266  Go to UniProtKB:  Q8I266
Glycosylation
Glycosylation Sites: 2

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
Y6F (Subject of Investigation/LOI)	D [auth A]	MMV009108 C21 H25 N3 O2 S2 CFAYJTHICHSZHC-UHFFFAOYSA-N
CLR	C [auth A]	CHOLESTEROL C27 H46 O HVYWMOMLDIMFJA-DPAQBDIFSA-N
NAG	B [auth A], E [auth A]	2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 2.98 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-11-20 
Deposition Author(s): Zhang, Z., Lyu, M.

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Funding Organization	Location	Grant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)	United States	--

Revision History  

• Version 1.0: 2024-11-20
  Type: Initial release