Crystal structure of human DPPA3 in complex with human UHRF1 PHD domain
Shiraishi, N., Arita, K.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
E3 ubiquitin-protein ligase UHRF1 | 68 | Homo sapiens | Mutation(s): 0  Gene Names: UHRF1, ICBP90, NP95, RNF106 EC: 2.3.2.27 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q96T88 (Homo sapiens) Explore Q96T88  Go to UniProtKB:  Q96T88 | |||||
PHAROS:  Q96T88 GTEx:  ENSG00000276043  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q96T88 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Developmental pluripotency-associated protein 3 | 38 | Homo sapiens | Mutation(s): 0  Gene Names: DPPA3, STELLAR | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q6W0C5 (Homo sapiens) Explore Q6W0C5  Go to UniProtKB:  Q6W0C5 | |||||
PHAROS:  Q6W0C5 GTEx:  ENSG00000187569  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q6W0C5 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ZN (Subject of Investigation/LOI) Query on ZN | C [auth A], D [auth A], E [auth A], F [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 77.802 | α = 90 |
b = 77.802 | β = 90 |
c = 140.674 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
XDS | data reduction |
XDS | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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Japan Society for the Promotion of Science (JSPS) | Japan | JP18H02392, |
Japan Society for the Promotion of Science (JSPS) | Japan | JP19H05741 |
Japan Society for the Promotion of Science (JSPS) | Japan | JP19H05294 |
Japan Science and Technology | Japan | 14530337 |