9IUY | pdb_00009iuy

Cryo-EM structure of mouse heavy-chain apoferritin resolved at 1.51 Angstroms

PDB DOI: https://doi.org/10.2210/pdb9IUY/pdb
EM Map EMD-60915: EMDB EMDataResource

Classification: OXIDOREDUCTASE
Organism(s): Mus musculus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2024-07-22 Released: 2024-08-21
Deposition Author(s): Wang, C.H., Wu, K.P., Chang, Y.C.
Funding Organization(s): Academia Sinica (Taiwan)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 1.51 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Cryo-EM structure of mouse heavy-chain apoferritin resolved at 1.51 Angstroms

Wang, C.H., Wu, K.P., Chang, Y.C.

To be published.

Macromolecule Content

Total Structure Weight: 508.39 kDa
Atom Count: 37,550
Modelled Residue Count: 4,176
Deposited Residue Count: 4,368
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Ferritin heavy chain	A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	182	Mus musculus	Mutation(s): 0 Gene Names: Fth1, Fth EC: 1.16.3.1
UniProt & NIH Common Fund Data Resources
Find proteins for P09528 (Mus musculus) Explore P09528 Go to UniProtKB: P09528
IMPC: MGI:95588
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P09528
Sequence Annotations Expand
Reference Sequence LOADING

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
FE (Subject of Investigation/LOI) Query on FE Download Ideal Coordinates CCD File SDF format, chain AA [auth A] SDF format, chain EA [auth B] SDF format, chain IA [auth C] SDF format, chain IB [auth L] SDF format, chain PA [auth E] SDF format, chain RB [auth P] MOL2 format, chain AA [auth A] MOL2 format, chain EA [auth B] MOL2 format, chain IA [auth C] MOL2 format, chain IB [auth L] MOL2 format, chain PA [auth E] MOL2 format, chain RB [auth P] mmCIF format, chain AA [auth A] mmCIF format, chain EA [auth B] mmCIF format, chain IA [auth C] mmCIF format, chain IB [auth L] mmCIF format, chain PA [auth E] mmCIF format, chain RB [auth P]	AA [auth A] EA [auth B] IA [auth C] IB [auth L] PA [auth E] AA [auth A], EA [auth B], IA [auth C], IB [auth L], PA [auth E], RB [auth P]	FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N		Interactions Focus chain AA [auth A] Focus chain EA [auth B] Focus chain IA [auth C] Focus chain IB [auth L] Focus chain PA [auth E] Focus chain RB [auth P] Interactions & Density Focus chain AA [auth A] Focus chain EA [auth B] Focus chain IA [auth C] Focus chain IB [auth L] Focus chain PA [auth E] Focus chain RB [auth P]
K (Subject of Investigation/LOI) Query on K Download Ideal Coordinates CCD File SDF format, chain BC [auth U] SDF format, chain CB [auth J] SDF format, chain DA [auth B] SDF format, chain DC [auth V] SDF format, chain FB [auth K] SDF format, chain FC [auth W] SDF format, chain HA [auth C] SDF format, chain HB [auth L] SDF format, chain HC [auth X] SDF format, chain KB [auth M] SDF format, chain LA [auth D] SDF format, chain MB [auth N] SDF format, chain OA [auth E] SDF format, chain OB [auth O] SDF format, chain QB [auth P] SDF format, chain SA [auth F] SDF format, chain TB [auth Q] SDF format, chain UA [auth G] SDF format, chain VB [auth R] SDF format, chain WA [auth H] SDF format, chain XB [auth S] SDF format, chain Z [auth A] SDF format, chain ZA [auth I] SDF format, chain ZB [auth T] MOL2 format, chain BC [auth U] MOL2 format, chain CB [auth J] MOL2 format, chain DA [auth B] MOL2 format, chain DC [auth V] MOL2 format, chain FB [auth K] MOL2 format, chain FC [auth W] MOL2 format, chain HA [auth C] MOL2 format, chain HB [auth L] MOL2 format, chain HC [auth X] MOL2 format, chain KB [auth M] MOL2 format, chain LA [auth D] MOL2 format, chain MB [auth N] MOL2 format, chain OA [auth E] MOL2 format, chain OB [auth O] MOL2 format, chain QB [auth P] MOL2 format, chain SA [auth F] MOL2 format, chain TB [auth Q] MOL2 format, chain UA [auth G] MOL2 format, chain VB [auth R] MOL2 format, chain WA [auth H] MOL2 format, chain XB [auth S] MOL2 format, chain Z [auth A] MOL2 format, chain ZA [auth I] MOL2 format, chain ZB [auth T] mmCIF format, chain BC [auth U] mmCIF format, chain CB [auth J] mmCIF format, chain DA [auth B] mmCIF format, chain DC [auth V] mmCIF format, chain FB [auth K] mmCIF format, chain FC [auth W] mmCIF format, chain HA [auth C] mmCIF format, chain HB [auth L] mmCIF format, chain HC [auth X] mmCIF format, chain KB [auth M] mmCIF format, chain LA [auth D] mmCIF format, chain MB [auth N] mmCIF format, chain OA [auth E] mmCIF format, chain OB [auth O] mmCIF format, chain QB [auth P] mmCIF format, chain SA [auth F] mmCIF format, chain TB [auth Q] mmCIF format, chain UA [auth G] mmCIF format, chain VB [auth R] mmCIF format, chain WA [auth H] mmCIF format, chain XB [auth S] mmCIF format, chain Z [auth A] mmCIF format, chain ZA [auth I] mmCIF format, chain ZB [auth T]	BC [auth U] CB [auth J] DA [auth B] DC [auth V] FB [auth K] BC [auth U], CB [auth J], DA [auth B], DC [auth V], FB [auth K], FC [auth W], HA [auth C], HB [auth L], HC [auth X], KB [auth M], LA [auth D], MB [auth N], OA [auth E], OB [auth O], QB [auth P], SA [auth F], TB [auth Q], UA [auth G], VB [auth R], WA [auth H], XB [auth S], Z [auth A], ZA [auth I], ZB [auth T]	POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N		Interactions Focus chain BC [auth U] Focus chain CB [auth J] Focus chain DA [auth B] Focus chain DC [auth V] Focus chain FB [auth K] Focus chain FC [auth W] Focus chain HA [auth C] Focus chain HB [auth L] Focus chain HC [auth X] Focus chain KB [auth M] Focus chain LA [auth D] Focus chain MB [auth N] Focus chain OA [auth E] Focus chain OB [auth O] Focus chain QB [auth P] Focus chain SA [auth F] Focus chain TB [auth Q] Focus chain UA [auth G] Focus chain VB [auth R] Focus chain WA [auth H] Focus chain XB [auth S] Focus chain Z [auth A] Focus chain ZA [auth I] Focus chain ZB [auth T] Interactions & Density Focus chain BC [auth U] Focus chain CB [auth J] Focus chain DA [auth B] Focus chain DC [auth V] Focus chain FB [auth K] Focus chain FC [auth W] Focus chain HA [auth C] Focus chain HB [auth L] Focus chain HC [auth X] Focus chain KB [auth M] Focus chain LA [auth D] Focus chain MB [auth N] Focus chain OA [auth E] Focus chain OB [auth O] Focus chain QB [auth P] Focus chain SA [auth F] Focus chain TB [auth Q] Focus chain UA [auth G] Focus chain VB [auth R] Focus chain WA [auth H] Focus chain XB [auth S] Focus chain Z [auth A] Focus chain ZA [auth I] Focus chain ZB [auth T]
MG (Subject of Investigation/LOI) Query on MG Download Ideal Coordinates CCD File SDF format, chain AB [auth I] SDF format, chain AC [auth U] SDF format, chain BA [auth A] SDF format, chain BB [auth J] SDF format, chain CA [auth B] SDF format, chain CC [auth V] SDF format, chain DB [auth J] SDF format, chain EB [auth K] SDF format, chain EC [auth W] SDF format, chain FA [auth B] SDF format, chain GA [auth C] SDF format, chain GB [auth L] SDF format, chain GC [auth X] SDF format, chain JA [auth C] SDF format, chain JB [auth M] SDF format, chain KA [auth D] SDF format, chain LB [auth N] SDF format, chain MA [auth D] SDF format, chain NA [auth E] SDF format, chain NB [auth O] SDF format, chain PB [auth P] SDF format, chain QA [auth E] SDF format, chain RA [auth F] SDF format, chain SB [auth Q] SDF format, chain TA [auth G] SDF format, chain UB [auth R] SDF format, chain VA [auth H] SDF format, chain WB [auth S] SDF format, chain XA [auth H] SDF format, chain Y [auth A] SDF format, chain YA [auth I] SDF format, chain YB [auth T] MOL2 format, chain AB [auth I] MOL2 format, chain AC [auth U] MOL2 format, chain BA [auth A] MOL2 format, chain BB [auth J] MOL2 format, chain CA [auth B] MOL2 format, chain CC [auth V] MOL2 format, chain DB [auth J] MOL2 format, chain EB [auth K] MOL2 format, chain EC [auth W] MOL2 format, chain FA [auth B] MOL2 format, chain GA [auth C] MOL2 format, chain GB [auth L] MOL2 format, chain GC [auth X] MOL2 format, chain JA [auth C] MOL2 format, chain JB [auth M] MOL2 format, chain KA [auth D] MOL2 format, chain LB [auth N] MOL2 format, chain MA [auth D] MOL2 format, chain NA [auth E] MOL2 format, chain NB [auth O] MOL2 format, chain PB [auth P] MOL2 format, chain QA [auth E] MOL2 format, chain RA [auth F] MOL2 format, chain SB [auth Q] MOL2 format, chain TA [auth G] MOL2 format, chain UB [auth R] MOL2 format, chain VA [auth H] MOL2 format, chain WB [auth S] MOL2 format, chain XA [auth H] MOL2 format, chain Y [auth A] MOL2 format, chain YA [auth I] MOL2 format, chain YB [auth T] mmCIF format, chain AB [auth I] mmCIF format, chain AC [auth U] mmCIF format, chain BA [auth A] mmCIF format, chain BB [auth J] mmCIF format, chain CA [auth B] mmCIF format, chain CC [auth V] mmCIF format, chain DB [auth J] mmCIF format, chain EB [auth K] mmCIF format, chain EC [auth W] mmCIF format, chain FA [auth B] mmCIF format, chain GA [auth C] mmCIF format, chain GB [auth L] mmCIF format, chain GC [auth X] mmCIF format, chain JA [auth C] mmCIF format, chain JB [auth M] mmCIF format, chain KA [auth D] mmCIF format, chain LB [auth N] mmCIF format, chain MA [auth D] mmCIF format, chain NA [auth E] mmCIF format, chain NB [auth O] mmCIF format, chain PB [auth P] mmCIF format, chain QA [auth E] mmCIF format, chain RA [auth F] mmCIF format, chain SB [auth Q] mmCIF format, chain TA [auth G] mmCIF format, chain UB [auth R] mmCIF format, chain VA [auth H] mmCIF format, chain WB [auth S] mmCIF format, chain XA [auth H] mmCIF format, chain Y [auth A] mmCIF format, chain YA [auth I] mmCIF format, chain YB [auth T]	AB [auth I] AC [auth U] BA [auth A] BB [auth J] CA [auth B] AB [auth I], AC [auth U], BA [auth A], BB [auth J], CA [auth B], CC [auth V], DB [auth J], EB [auth K], EC [auth W], FA [auth B], GA [auth C], GB [auth L], GC [auth X], JA [auth C], JB [auth M], KA [auth D], LB [auth N], MA [auth D], NA [auth E], NB [auth O], PB [auth P], QA [auth E], RA [auth F], SB [auth Q], TA [auth G], UB [auth R], VA [auth H], WB [auth S], XA [auth H], Y [auth A], YA [auth I], YB [auth T]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain AB [auth I] Focus chain AC [auth U] Focus chain BA [auth A] Focus chain BB [auth J] Focus chain CA [auth B] Focus chain CC [auth V] Focus chain DB [auth J] Focus chain EB [auth K] Focus chain EC [auth W] Focus chain FA [auth B] Focus chain GA [auth C] Focus chain GB [auth L] Focus chain GC [auth X] Focus chain JA [auth C] Focus chain JB [auth M] Focus chain KA [auth D] Focus chain LB [auth N] Focus chain MA [auth D] Focus chain NA [auth E] Focus chain NB [auth O] Focus chain PB [auth P] Focus chain QA [auth E] Focus chain RA [auth F] Focus chain SB [auth Q] Focus chain TA [auth G] Focus chain UB [auth R] Focus chain VA [auth H] Focus chain WB [auth S] Focus chain XA [auth H] Focus chain Y [auth A] Focus chain YA [auth I] Focus chain YB [auth T] Interactions & Density Focus chain AB [auth I] Focus chain AC [auth U] Focus chain BA [auth A] Focus chain BB [auth J] Focus chain CA [auth B] Focus chain CC [auth V] Focus chain DB [auth J] Focus chain EB [auth K] Focus chain EC [auth W] Focus chain FA [auth B] Focus chain GA [auth C] Focus chain GB [auth L] Focus chain GC [auth X] Focus chain JA [auth C] Focus chain JB [auth M] Focus chain KA [auth D] Focus chain LB [auth N] Focus chain MA [auth D] Focus chain NA [auth E] Focus chain NB [auth O] Focus chain PB [auth P] Focus chain QA [auth E] Focus chain RA [auth F] Focus chain SB [auth Q] Focus chain TA [auth G] Focus chain UB [auth R] Focus chain VA [auth H] Focus chain WB [auth S] Focus chain XA [auth H] Focus chain Y [auth A] Focus chain YA [auth I] Focus chain YB [auth T]