Mechanism of allosteric inhibition of RUVBL1-RUVBL2 by the small-molecule CB-6644
Garcia-Martin, C., Lopez-Perrote, A., Boskovic, J., Llorca, O.(2024) Cell Rep Phys Sci 
Experimental Data Snapshot
Starting Model: in silico
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wwPDB Validation   3D Report Full Report
(2024) Cell Rep Phys Sci 
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
RuvB-like 1 | 459 | Homo sapiens | Mutation(s): 0  Gene Names: RUVBL1, INO80H, NMP238, TIP49, TIP49A EC: 3.6.4.12 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9Y265 (Homo sapiens) Explore Q9Y265  Go to UniProtKB:  Q9Y265 | |||||
PHAROS:  Q9Y265 GTEx:  ENSG00000175792  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9Y265 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
RuvB-like 2 | 764 | Homo sapiens | Mutation(s): 0  Gene Names: RUVBL2, INO80J, TIP48, TIP49B, CGI-46 EC: 3.6.4.12 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9Y230 (Homo sapiens) Explore Q9Y230  Go to UniProtKB:  Q9Y230 | |||||
PHAROS:  Q9Y230 GTEx:  ENSG00000183207  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9Y230 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
A1H5V (Subject of Investigation/LOI) Query on A1H5V | H [auth A], J [auth B], L [auth C] | 5-chloranyl-2-ethoxy-4-fluoranyl-~{N}-[4-[[3-(methoxymethyl)-1-oxidanylidene-6,7-dihydro-5~{H}-pyrazolo[1,2-a][1,2]benzodiazepin-2-yl]amino]-2,2-dimethyl-4-oxidanylidene-butyl]benzamide C29 H34 Cl F N4 O5 VYCOZEBCSAQCES-UHFFFAOYSA-N | |||
ATP Query on ATP | G [auth A] I [auth B] K [auth C] M [auth D] O [auth E] | ADENOSINE-5'-TRIPHOSPHATE C10 H16 N5 O13 P3 ZKHQWZAMYRWXGA-KQYNXXCUSA-N | |||
MG Query on MG | N [auth D], P [auth E], Q [auth F], S [auth F] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Task | Software Package | Version |
---|---|---|
RECONSTRUCTION | RELION | 4.0 |
MODEL REFINEMENT | ISOLDE | 1.7 |
MODEL REFINEMENT | PHENIX | 1.20.1-4487 |
MODEL REFINEMENT | Coot | 0.9.8.5 |
Funding Organization | Location | Grant Number |
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Agencia Estatal de Investigacion (AEI) | Spain | PID2020-114429RB-I00 |