8PI0 | pdb_00008pi0

NMR2 Structure of KRAS G12V (GMPPNP bound) in complex with 5-(1H-indol-2-l)piperazin-2-one

• PDB DOI: https://doi.org/10.2210/pdb8PI0/pdb
• BMRB: 34827

• Classification: ONCOPROTEIN
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): Yes 


• Deposited: 2023-06-20 Released: 2024-07-10 
• Deposition Author(s): Buetikofer, M., Orts, J.
• Funding Organization(s): Swiss Cancer League

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 4 
• Conformers Submitted: 4 
• Selection Criteria: structures with the lowest energy 

Literature

NMR2 Structure of KRAS G12V (GMPPNP bound) in complex with 5-(1H-indol-2-l)piperazin-2-one

Buetikofer, M., Orts, J.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: NMR Distance Restraints

Macromolecule Content

• Total Structure Weight: 19.38 kDa 
• Atom Count: 1,360 
• Modelled Residue Count: 168 
• Deposited Residue Count: 168 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
V-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog, isoform CRA_b	A	168	Homo sapiens	Mutation(s): 1  Gene Names: KRAS, hCG_14731 EC: 3.6.5.2
UniProt & NIH Common Fund Data Resources
Find proteins for P01116 (Homo sapiens) Explore P01116  Go to UniProtKB:  P01116
PHAROS:  P01116 GTEx:  ENSG00000133703

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
YVW (Subject of Investigation/LOI)	B [auth A]	(5~{S})-5-(1~{H}-indol-2-yl)piperazin-2-one C12 H13 N3 O AKZZWJXICXKZDI-NSHDSACASA-N

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 4 
• Conformers Submitted: 4 
• Selection Criteria: structures with the lowest energy 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-07-10 
Deposition Author(s): Buetikofer, M., Orts, J.

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Funding Organization	Location	Grant Number
Swiss Cancer League	Switzerland	KFS-4903-08-2019

Revision History  

• Version 1.0: 2024-07-10
  Type: Initial release