8RWV | pdb_00008rwv

Human OCCM DNA licensing intermediate


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 6.68 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

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Literature

Reconstitution of human DNA licensing and the structural and functional analysis of key intermediates.

Wells, J.N.Edwardes, L.V.Leber, V.Allyjaun, S.Peach, M.Tomkins, J.Kefala-Stavridi, A.Faull, S.V.Aramayo, R.Pestana, C.M.Ranjha, L.Speck, C.

(2025) Nat Commun 16: 478-478

  • DOI: https://doi.org/10.1038/s41467-024-55772-z
  • Primary Citation of Related Structures:  
    8RWV

  • PubMed Abstract: 

    Human DNA licensing initiates replication fork assembly and DNA replication. This reaction promotes the loading of the hMCM2-7 complex on DNA, which represents the core of the replicative helicase that unwinds DNA during S-phase. Here, we report the reconstitution of human DNA licensing using purified proteins. We showed that the in vitro reaction is specific and results in the assembly of high-salt resistant hMCM2-7 double-hexamers. With ATPγS, an hORC1-5-hCDC6-hCDT1-hMCM2-7 (hOCCM) assembles independent of hORC6, but hORC6 enhances double-hexamer formation. We determined the hOCCM structure, which showed that hORC-hCDC6 recruits hMCM2-7 via five hMCM winged-helix domains. The structure highlights how hORC1 activates the hCDC6 ATPase and uncovered an unexpected role for hCDC6 ATPase in complex disassembly. We identified that hCDC6 binding to hORC1-5 stabilises hORC2-DNA interactions and supports hMCM3-dependent recruitment of hMCM2-7. Finally, the structure allowed us to locate cancer-associated mutations at the hCDC6-hMCM3 interface, which showed specific helicase loading defects.


  • Organizational Affiliation

    DNA Replication Group, Institute of Clinical Sciences, Faculty of Medicine, Imperial College London, London, UK.


Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
DNA replication licensing factor MCM2A [auth 2]947Homo sapiensMutation(s): 0 
Gene Names: MCM2BM28CCNL1CDCL1KIAA0030
EC: 3.6.4.12
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Find proteins for P49736 (Homo sapiens)
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PHAROS:  P49736
GTEx:  ENSG00000073111 
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UniProt GroupP49736
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Isoform 2 of DNA replication licensing factor MCM3B [auth 3]853Homo sapiensMutation(s): 0 
Gene Names: MCM3
EC: 3.6.4.12
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Find proteins for P25205 (Homo sapiens)
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PHAROS:  P25205
GTEx:  ENSG00000112118 
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UniProt GroupP25205
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
DNA replication licensing factor MCM4C [auth 4]883Homo sapiensMutation(s): 0 
Gene Names: MCM4CDC21
EC: 3.6.4.12
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Find proteins for P33991 (Homo sapiens)
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GTEx:  ENSG00000104738 
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UniProt GroupP33991
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
DNA replication licensing factor MCM6D [auth 6]821Homo sapiensMutation(s): 0 
Gene Names: MCM6
EC: 3.6.4.12
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Find proteins for Q14566 (Homo sapiens)
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GTEx:  ENSG00000076003 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
DNA replication licensing factor MCM7E [auth 7]719Homo sapiensMutation(s): 0 
Gene Names: MCM7CDC47MCM2
EC: 3.6.4.12
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GTEx:  ENSG00000166508 
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UniProt GroupP33993
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Origin recognition complex subunit 1F [auth A]961Homo sapiensMutation(s): 0 
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Find proteins for Q13415 (Homo sapiens)
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GTEx:  ENSG00000085840 
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UniProt GroupQ13415
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Origin recognition complex subunit 2G [auth B]577Homo sapiensMutation(s): 0 
Gene Names: ORC2ORC2L
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Find proteins for Q13416 (Homo sapiens)
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GTEx:  ENSG00000115942 
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Isoform 2 of Origin recognition complex subunit 3H [auth C]712Homo sapiensMutation(s): 0 
Gene Names: ORC3LATHEOORC3L
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Find proteins for Q9UBD5 (Homo sapiens)
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PHAROS:  Q9UBD5
GTEx:  ENSG00000135336 
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UniProt GroupQ9UBD5
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
Origin recognition complex subunit 4I [auth D]436Homo sapiensMutation(s): 0 
Gene Names: ORC4ORC4L
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Find proteins for O43929 (Homo sapiens)
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GTEx:  ENSG00000115947 
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
Origin recognition complex subunit 5J [auth E]435Homo sapiensMutation(s): 0 
Gene Names: ORC5ORC5L
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Find proteins for O43913 (Homo sapiens)
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GTEx:  ENSG00000164815 
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UniProt GroupO43913
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
Cell division control protein 6 homologK [auth F]560Homo sapiensMutation(s): 1 
Gene Names: CDC6CDC18L
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Find proteins for Q99741 (Homo sapiens)
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GTEx:  ENSG00000094804 
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
DNA replication factor Cdt1L [auth G]410Homo sapiensMutation(s): 0 
Gene Names: CDT1
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Find proteins for Q9H211 (Homo sapiens)
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GTEx:  ENSG00000167513 
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UniProt GroupQ9H211
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 6.68 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.20.1_4487:

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Cancer Research UKUnited Kingdom100006

Revision History  (Full details and data files)

  • Version 1.0: 2025-02-05
    Type: Initial release