1UAG
UDP-N-ACETYLMURAMOYL-L-ALANINE:D-GLUTAMATE LIGASE
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1uaga1 | Alpha and beta proteins (a/b) | MurCD N-terminal domain | MurCD N-terminal domain | MurCD N-terminal domain | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
A | d1uaga2 | Alpha and beta proteins (a/b) | MurD-like peptide ligases, peptide-binding domain | MurD-like peptide ligases, peptide-binding domain | MurCDEF C-terminal domain | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
A | d1uaga3 | Alpha and beta proteins (a/b) | Ribokinase-like | MurD-like peptide ligases, catalytic domain | MurCDEF | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | MurCD N-terminal domain | 8058462 | 3000082 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | MurD catalytic domain-like | 8058463 | 3000107 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | MurD peptide-binding domain-like | 8091456 | 3001290 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | NAD_binding_8_1 | e1uagA1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: MurCD/PglD N-terminal domain-like | F: NAD_binding_8_1 | ECOD (1.6) |
A | Mur_ligase_M | e1uagA2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Mur_ligase_M | ECOD (1.6) |
A | Mur_ligase_C | e1uagA3 | A: a/b three-layered sandwiches | X: MurD-like peptide ligases, peptide-binding domain (From Topology) | H: MurD-like peptide ligases, peptide-binding domain (From Topology) | T: MurD-like peptide ligases, peptide-binding domain | F: Mur_ligase_C | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.720 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | NAD(P)-binding Rossmann-like Domain | CATH (4.3.0) |
A | 3.40.1190.10 | Alpha Beta | 3-Layer(aba) Sandwich | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | Mur-like, catalytic domain | CATH (4.3.0) |
A | 3.90.190.20 | Alpha Beta | Alpha-Beta Complex | Protein-Tyrosine Phosphatase | Chain A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF08245 | Mur ligase middle domain (Mur_ligase_M) | Mur ligase middle domain | - | Domain | |
PF21799 | Mur ligase MurD-like, N-terminal domain (MurD-like_N) | Mur ligase MurD-like, N-terminal domain | This domain is found at the N-terminal end of Mur ligases predominantly from proteobacteria, including UDP-N -acetylmuramoylalanine--D-glutamate ligase from Escherichia coli (MurD). Proteins in this family play a crucial role in the intracellular ste ... | Domain | |
PF02875 | Mur ligase, glutamate ligase domain (Mur_ligase_C) | Mur ligase, glutamate ligase domain | This entry contains a number of related ligase enzymes which have EC numbers 6.3.2.* which includes: MurC (Swiss:P17952), MurD (Swiss:P14900), MurE (Swiss:P22188), MurF (Swiss:P11880), Mpl (Swiss:P37773) and FolC (Swiss:P08192). MurC, MurD, MurE and ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR004101 | Mur ligase, C-terminal | Domain | |
IPR036565 | Mur-like, catalytic domain superfamily | Homologous Superfamily | |
IPR005762 | UDP-N-acetylmuramoylalanine-D-glutamate ligase MurD | Family | |
IPR036615 | Mur ligase, C-terminal domain superfamily | Homologous Superfamily | |
IPR013221 | Mur ligase, central | Domain |
Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage
Chains | Enzyme Name | Description | Catalytic Residues |
---|---|---|---|
UDP-N-acetylmuramoyl-L-alanine---D-glutamate ligase M-CSA #317 | UDP-N-acetylmuramoylalanine-D-glutamate ligase catalyses the formation of the peptide bond between UDP-N-acetylmuramoyl-L-alanine and D-glutamate in peptidoglycan biosynthesis. Peptidoglycan is formed as linear repeating disaccharide chains interconnected by a short peptide moiety. It is found in bacterial cell walls and hence peptidoglycan biosynthetic enzymes are possible targets for antibacterial drugs. | EC: 6.3.2.9 (PDB Primary Data) |