Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8074458 3000850 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8074470 3000850 SCOP2B (2022-06-29)
CSCOP2B Superfamily4Fe-4S ferredoxins 8074478 3000020 SCOP2B (2022-06-29)
ESCOP2 FamilyPhotosystem I accessory protein E (PsaE) 8074493 4001749 SCOP2 (2022-06-29)
ESCOP2 SuperfamilyElectron transport accessory proteins 8074494 3000325 SCOP2 (2022-06-29)
FSCOP2 FamilySubunit III of photosystem I reaction centre, PsaF 8074445 4002091 SCOP2 (2022-06-29)
FSCOP2 SuperfamilySubunit III of photosystem I reaction centre, PsaF 8074446 3000813 SCOP2 (2022-06-29)
HSCOP2B SuperfamilyPhotosystem I reaction centre subunit VI 8102523 3002733 SCOP2B (2022-06-29)
JSCOP2 FamilySubunit IX of photosystem I reaction centre, PsaJ 8074515 4002101 SCOP2 (2022-06-29)
JSCOP2 SuperfamilySubunit IX of photosystem I reaction centre, PsaJ 8074516 3000824 SCOP2 (2022-06-29)
LSCOP2B SuperfamilyPhotosystem I reaction center subunit XI, PsaL 8087178 3000870 SCOP2B (2022-06-29)
N [auth 1]SCOP2B SuperfamilyChlorophyll a-b binding protein 8076986 3000343 SCOP2B (2022-06-29)
O [auth 2]SCOP2B SuperfamilyChlorophyll a-b binding protein 8076998 3000343 SCOP2B (2022-06-29)
Q [auth 4]SCOP2B SuperfamilyChlorophyll a-b binding protein 8077000 3000343 SCOP2B (2022-06-29)
DSCOP2 FamilyPhotosystem I subunit PsaD 8074487 4003498 SCOP2 (2022-06-29)
DSCOP2 SuperfamilyPhotosystem I subunit PsaD 8074488 3000951 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APsaA_PsaB_Ce2o01A2 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PsaA_PsaB_CECOD (1.6)
APsaA_PsaB_Ne2o01A1 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PsaA_PsaB_NECOD (1.6)
BPsaA_PsaB_Ce2o01B2 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PsaA_PsaB_CECOD (1.6)
BPsaA_PsaB_Ne2o01B1 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PsaA_PsaB_NECOD (1.6)
CFer4_21_1e2o01C1 A: a+b two layersX: 4Fe-4S ferredoxin (From Topology)H: 4Fe-4S ferredoxin (From Topology)T: 4Fe-4S ferredoxinF: Fer4_21_1ECOD (1.6)
EPSI_PsaEe2o01E1 A: beta barrelsX: SH3H: SH3T: SH3F: PSI_PsaEECOD (1.6)
FPSI_PsaFe2o01F1 A: extended segmentsX: Subunit III of photosystem I reaction centre, PsaF (From Topology)H: Subunit III of photosystem I reaction centre, PsaF (From Topology)T: Subunit III of photosystem I reaction centre, PsaFF: PSI_PsaFECOD (1.6)
GPSI_PSAKe2o01G1 A: alpha bundlesX: Photosystem I reaction center subunit X, PsaK (From Topology)H: Photosystem I reaction center subunit X, PsaK (From Topology)T: Photosystem I reaction center subunit X, PsaKF: PSI_PSAKECOD (1.6)
HPSI_PsaHe2o01H1 A: extended segmentsX: Subunit VI of Photosystem I reaction centre (From Topology)H: Subunit VI of Photosystem I reaction centre (From Topology)T: Subunit VI of Photosystem I reaction centreF: PSI_PsaHECOD (1.6)
IPSI_8e2o01I1 A: extended segmentsX: Subunit VIII of photosystem I reaction centre, PsaI (From Topology)H: Subunit VIII of photosystem I reaction centre, PsaI (From Topology)T: Subunit VIII of photosystem I reaction centre, PsaIF: PSI_8ECOD (1.6)
JPSI_PsaJe2o01J1 A: extended segmentsX: Subunit IX of photosystem I reaction centre, PsaJ (From Topology)H: Subunit IX of photosystem I reaction centre, PsaJ (From Topology)T: Subunit IX of photosystem I reaction centre, PsaJF: PSI_PsaJECOD (1.6)
LPsaLe2o01L1 A: alpha bundlesX: Photosystem I reaction center subunit XI, PsaL (From Topology)H: Photosystem I reaction center subunit XI, PsaL (From Topology)T: Photosystem I reaction center subunit XI, PsaLF: PsaLECOD (1.6)
M [auth N]PsaNe2o01N1 A: extended segmentsX: Subunit N of Photosystem I reaction centre (From Topology)H: Subunit N of Photosystem I reaction centre (From Topology)T: Subunit N of Photosystem I reaction centreF: PsaNECOD (1.6)
N [auth 1]Chloroa_b-binde2o0111 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: Chloroa_b-bindECOD (1.6)
O [auth 2]Chloroa_b-binde2o0121 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: Chloroa_b-bindECOD (1.6)
P [auth 3]Chloroa_b-binde2o0131 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: Chloroa_b-bindECOD (1.6)
Q [auth 4]Chloroa_b-binde2o0141 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: Chloroa_b-bindECOD (1.6)
DPsaDe2o01D1 A: a+b two layersX: Photosystem I subunit PsaD (From Topology)H: Photosystem I subunit PsaD (From Topology)T: Photosystem I subunit PsaDF: PsaDECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A1.20.1130.10 Mainly Alpha Up-down Bundle Photosystem I p700 chlorophyll A apoprotein A1 Photosystem I PsaA/PsaBCATH (4.3.0)
B1.20.1130.10 Mainly Alpha Up-down Bundle Photosystem I p700 chlorophyll A apoprotein A1 Photosystem I PsaA/PsaBCATH (4.3.0)
C3.30.70.20 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits CATH (4.3.0)
E2.30.30.50 Mainly Beta Roll SH3 type barrels. CATH (4.3.0)
F1.10.8.110 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein domain 3CATH (4.3.0)
G1.10.286.40 Mainly Alpha Orthogonal Bundle GTP Cyclohydrolase I Chain A, domain 1CATH (4.3.0)
H1.20.5.220 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces CATH (4.3.0)
J1.20.5.510 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Single helix binCATH (4.3.0)
L1.20.1240.10 Mainly Alpha Up-down Bundle Photosystem 1 Reaction Centre Subunit Xi Chain: LCATH (4.3.0)
M [auth N]1.20.5.740 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Single helix binCATH (4.3.0)
N [auth 1]1.10.3460.10 Mainly Alpha Orthogonal Bundle Chlorophyll a-b binding protein Chlorophyll a/b binding protein domainCATH (4.3.0)
O [auth 2]1.10.3460.10 Mainly Alpha Orthogonal Bundle Chlorophyll a-b binding protein Chlorophyll a/b binding protein domainCATH (4.3.0)
P [auth 3]1.10.3460.10 Mainly Alpha Orthogonal Bundle Chlorophyll a-b binding protein Chlorophyll a/b binding protein domainCATH (4.3.0)
Q [auth 4]1.10.3460.10 Mainly Alpha Orthogonal Bundle Chlorophyll a-b binding protein Chlorophyll a/b binding protein domainCATH (4.3.0)
D3.30.1470.10 Alpha Beta 2-Layer Sandwich Photosystem 1 Reaction Centre Subunit Ii Chain: DCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00223Photosystem I psaA/psaB protein (PsaA_PsaB)Photosystem I psaA/psaB protein- Family
PF00223Photosystem I psaA/psaB protein (PsaA_PsaB)Photosystem I psaA/psaB protein- Family
PF146974Fe-4S dicluster domain (Fer4_21)4Fe-4S dicluster domainSuperfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ...Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.
Domain
PF02427Photosystem I reaction centre subunit IV / PsaE (PSI_PsaE)Photosystem I reaction centre subunit IV / PsaEPsaE is a 69 amino acid polypeptide from photosystem I present on the stromal side of the thylakoid membrane [1]. The structure is comprised of a well-defined five-stranded beta-sheet similar to SH3 domains [1].Domain
PF02507Photosystem I reaction centre subunit III (PSI_PsaF)Photosystem I reaction centre subunit III- Family
PF01241Photosystem I psaG / psaK (PSI_PSAK)Photosystem I psaG / psaK- Family
PF03244Photosystem I reaction centre subunit VI (PSI_PsaH)Photosystem I reaction centre subunit VI- Family
PF00796Photosystem I reaction centre subunit VIII (PSI_8)Photosystem I reaction centre subunit VIII- Family
PF01701Photosystem I reaction centre subunit IX / PsaJ (PSI_PsaJ)Photosystem I reaction centre subunit IX / PsaJ- Family
PF02605Photosystem I reaction centre subunit XI (PsaL)Photosystem I reaction centre subunit XI- Family
M [auth N]PF05479Photosystem I reaction centre subunit N (PSAN or PSI-N) (PsaN)Photosystem I reaction centre subunit N (PSAN or PSI-N)- Family
N [auth 1]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
O [auth 2]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
P [auth 3]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
Q [auth 4]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
PF02531PsaD (PsaD)PsaD- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Photosystem I P700 chlorophyll a apoprotein A1
Photosystem I P700 chlorophyll a apoprotein A2
Photosystem I iron-sulfur center
Photosystem I reaction center subunit IV A, chloroplast
Photosystem I reaction center subunit III, chloroplast
Photosystem I reaction center subunit V, chloroplast-
Photosystem I reaction center subunit VI, chloroplast
Photosystem I reaction center subunit VIII-
Photosystem I reaction center subunit IX-
Photosystem I reaction center subunit psaK, chloroplast---
Photosystem I reaction center subunit XI, chloroplast-
M [auth N]Photosystem I-N subunit-
N [auth 1]AT3g54890
O [auth 2]Type II chlorophyll a/b binding protein from photosystem I
P [auth 3]PSI type III chlorophyll a/b-binding protein
Q [auth 4]PSI light-harvesting antenna chlorophyll a/b-binding protein
Photosystem I reaction center subunit II, chloroplast-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR006243Photosystem I PsaAFamily
IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
IPR001280Photosystem I PsaA/PsaBFamily
IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site
IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
IPR001280Photosystem I PsaA/PsaBFamily
IPR006244Photosystem I PsaBFamily
IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site
IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved siteConserved Site
IPR050157Photosystem I iron-sulfur centerFamily
IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainDomain
IPR017491Photosystem I protein PsaCFamily
IPR008990Electron transport accessory-like domain superfamilyHomologous Superfamily
IPR003375Photosystem I PsaE, reaction centre subunit IVFamily
IPR036577Photosystem I PsaF, reaction centre subunit III superfamilyHomologous Superfamily
IPR003666Photosystem I PsaF, reaction centre subunit IIIFamily
IPR023618Photosystem I PsaG/PsaK domain, chloroplasticHomologous Superfamily
IPR017494Photosystem I reaction center subunit VFamily
IPR016370Photosystem I reaction center subunit V/PsaK, plantFamily
IPR000549Photosystem I reaction center subunit V/PsaKFamily
IPR004928Photosystem I PsaH, reaction centre subunit VIFamily
IPR036357Photosystem I reaction centre subunit VIII superfamilyHomologous Superfamily
IPR001302Photosystem I reaction centre subunit VIIIFamily
IPR002615Photosystem I PsaJ, reaction centre subunit IXFamily
IPR036062Photosystem I PsaJ, reaction centre subunit IX superfamilyHomologous Superfamily
IPR003757Photosystem I PsaL, reaction centre subunit XIDomain
IPR022980Photosystem I, reaction centre subunit XIFamily
IPR036592Photosystem I PsaL, reaction centre subunit XI superfamilyHomologous Superfamily
M [auth N]IPR008796Photosystem I reaction centre subunit N, chloroplasticFamily
M [auth N]IPR044907Photosystem I reaction centre subunit N superfamilyHomologous Superfamily
N [auth 1]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
N [auth 1]IPR022796Chlorophyll A-B binding proteinFamily
O [auth 2]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
O [auth 2]IPR022796Chlorophyll A-B binding proteinFamily
P [auth 3]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
P [auth 3]IPR022796Chlorophyll A-B binding proteinFamily
Q [auth 4]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
Q [auth 4]IPR022796Chlorophyll A-B binding proteinFamily
IPR003685Photosystem I PsaDFamily
IPR036579Photosystem I, reaction centre subunit PsaD superfamilyHomologous Superfamily

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
A, B, C, D, E
PDBTMAnnotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Membrane Protein Annotation: mpstruc mpstruc Database Homepage