2V8Q
Crystal structure of the regulatory fragment of mammalian AMPK in complexes with AMP
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2v8qa1 | Alpha and beta proteins (a+b) | TBP-like | KA1-like | Ssp2 C-terminal domain-like | 5'-AMP-activated protein kinase catalytic subunit alpha-1, AMPK1 | RAT (Rattus norvegicus ) [TaxId: 10116 ], | SCOPe (2.08) |
B | d2v8qb1 | Alpha and beta proteins (a+b) | AMPKBI-like | AMPKBI-like | AMPKBI-like | 5'-AMP-activated protein kinase subunit beta-2 | HUMAN (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
C [auth E] | d2v8qe1 | Alpha and beta proteins (a+b) | CBS-domain pair | CBS-domain pair | CBS-domain pair | 5'-AMP-activated protein kinase subunit gamma-1, AMPKg | RAT (Rattus norvegicus ) [TaxId: 10116 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Ssp2 C-terminal domain-like | 8025001 | 4002378 | SCOP2 (2021-05-27) |
A | SCOP2 Superfamily | KA1-like | 8037380 | 3001856 | SCOP2 (2021-05-27) |
B | SCOP2 Family | AMPKBI-like | 8025002 | 4001835 | SCOP2 (2021-05-27) |
B | SCOP2 Superfamily | AMPKBI-like | 8037381 | 3000446 | SCOP2 (2021-05-27) |
C [auth E] | SCOP2 Family | CBS-domain pair | 8025004 | 4000247 | SCOP2 (2021-05-27) |
C [auth E] | SCOP2 Family | CBS-domain pair | 8025005 | 4000247 | SCOP2 (2021-05-27) |
C [auth E] | SCOP2 Superfamily | CBS-domain pair | 8037383 | 3000123 | SCOP2 (2021-05-27) |
C [auth E] | SCOP2 Superfamily | CBS-domain pair | 8037384 | 3000123 | SCOP2 (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF16579 | e2v8qA1 | A: a+b two layers | X: TBP-like | H: Kinase associated domain 1, KA1 (From Topology) | T: Kinase associated domain 1, KA1 | F: PF16579 | ECOD (1.6) |
B | PF04739 | e2v8qB1 | A: a+b two layers | X: AMPKBI-like (From Topology) | H: AMPKBI-like (From Topology) | T: AMPKBI-like | F: PF04739 | ECOD (1.6) |
C [auth E] | PF00571 | e2v8qE1 | A: a+b duplicates or obligate multimers | X: CBS-domain (From Topology) | H: CBS-domain (From Topology) | T: CBS-domain | F: PF00571 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.310.80 | Alpha Beta | 2-Layer Sandwich | TATA-Binding Protein | Kinase associated domain 1, KA1 | CATH (4.3.0) |
B | 6.20.250.60 | Special | Other non-globular | Double Stranded RNA Binding Domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF16579 | Adenylate sensor of SNF1-like protein kinase (AdenylateSensor) | Adenylate sensor of SNF1-like protein kinase | AdenylateSensor is a family found at the C-terminus of SNF1-like protein kinases snf other protein-kinases [1]. | Domain | |
PF04739 | 5'-AMP-activated protein kinase beta subunit, interaction domain (AMPKBI) | 5'-AMP-activated protein kinase beta subunit, interaction domain | - | Family | |
C [auth E] | PF00571 | CBS domain (CBS) | CBS domain | CBS domains are small intracellular modules that pair together to form a stable globular domain [2]. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain [6]. CBS domains have been shown to bind ligands ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR000719 | Protein kinase domain | Domain | |
IPR039137 | 5'-AMP-activated protein kinase alpha 1 catalytic subunit, C-terminal | Domain | |
IPR049020 | PRKAA1/2, autoinhibitory domain | Domain | |
IPR017441 | Protein kinase, ATP binding site | Binding Site | |
IPR032270 | AMPK, C-terminal adenylate sensor domain | Domain | |
IPR008271 | Serine/threonine-protein kinase, active site | Active Site | |
IPR028375 | KA1 domain/Ssp2, C-terminal | Homologous Superfamily | |
IPR028797 | PRKAA1, UBA-like autoinhibitory domain | Domain | |
IPR011009 | Protein kinase-like domain superfamily | Homologous Superfamily | |
IPR032640 | AMP-activated protein kinase, glycogen-binding domain | Domain | |
IPR037256 | ASC domain superfamily | Homologous Superfamily | |
IPR006828 | Association with the SNF1 complex (ASC) domain | Domain | |
IPR013783 | Immunoglobulin-like fold | Homologous Superfamily | |
IPR014756 | Immunoglobulin E-set | Homologous Superfamily | |
C [auth E] | IPR046342 | CBS domain superfamily | Homologous Superfamily |
C [auth E] | IPR000644 | CBS domain | Domain |