2VJI
Tailspike protein of E.coli bacteriophage HK620
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | EUF07526 | e2vjiA1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: EUF07526 | ECOD (1.6) |
A | Glyco_hydro_28 | e2vjiA2 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Pectin lyase-like (From Topology) | T: Pectin lyase-like | F: Glyco_hydro_28 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 6.10.20.90 | Special | Helix non-globular | Arc Repressor Mutant, subunit A | Hk620 tailspike protein, N-terminal domain-like | CATH (4.3.0) |
A | 2.160.20.10 | Mainly Beta | 3 Solenoid | Pectate Lyase C-like | Single-stranded right-handed beta-helix, Pectin lyase-like | CATH (4.3.0) |
A | 2.40.30.250 | Mainly Beta | Beta Barrel | Elongation Factor Tu (Ef-tu) | domain 3 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF18781 | Phage spike trimer (Phage_spike_2) | Phage spike trimer | - | Repeat | |
PF22424 | HK620, Tail spike protein, C-terminal (HK620_9_C) | HK620, Tail spike protein, C-terminal | This domain is found at the C-terminal end of Tail spike protein from Enterobacteria phage HK620 (9). This domain adopts a beta -sandwich configuration [1]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
TAILSPIKE PROTEIN |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR041303 | Phage spike trimer 2 | Repeat | |
IPR012334 | Pectin lyase fold | Homologous Superfamily | |
IPR036730 | Phage P22 tailspike-like, N-terminal domain superfamily | Homologous Superfamily | |
IPR009093 | Bacteriophage P22 tailspike, N-terminal | Domain | |
IPR011050 | Pectin lyase fold/virulence factor | Homologous Superfamily |