3BUI
Golgi mannosidase II D204A catalytic nucleophile mutant complex with Tris
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d3buia1 | All alpha proteins | immunoglobulin/albumin-binding domain-like | Families 57/38 glycoside transferase middle domain | alpha-mannosidase, domain 2 | Golgi alpha-mannosidase II | Fruit fly (Drosophila melanogaster ) [TaxId: 7227 ], | SCOPe (2.08) |
A | d3buia2 | All beta proteins | Supersandwich | Galactose mutarotase-like | alpha-mannosidase, C-terminal domain | Golgi alpha-mannosidase II | Fruit fly (Drosophila melanogaster ) [TaxId: 7227 ], | SCOPe (2.08) |
A | d3buia3 | Alpha and beta proteins (a/b) | 7-stranded beta/alpha barrel | Glycoside hydrolase/deacetylase | alpha-mannosidase | Golgi alpha-mannosidase II | Fruit fly (Drosophila melanogaster ) [TaxId: 7227 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Families 57/38 glycoside transferase middle domain | 8039561 | 3000997 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Galactose mutarotase-like | 8039564 | 3000035 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Glycoside hydrolase/deacetylase | 8039566 | 3001025 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | KOG1958 | e3buiA6 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: Glycosyl hydrolase domain (From Topology) | T: Glycosyl hydrolase domain | F: KOG1958 | ECOD (1.6) |
A | KOG1959 | e3buiA5 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: Glycosyl hydrolase domain (From Topology) | T: Glycosyl hydrolase domain | F: KOG1959 | ECOD (1.6) |
A | Glyco_hydro_38C_1st_1 | e3buiA4 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: supersandwich (From Topology) | T: supersandwich | F: Glyco_hydro_38C_1st_1 | ECOD (1.6) |
A | Alpha-mann_mid | e3buiA2 | A: alpha bundles | X: immunoglobulin/albumin-binding domain-like | H: Families 57/38 glycoside transferase middle domain (From Topology) | T: Families 57/38 glycoside transferase middle domain | F: Alpha-mann_mid | ECOD (1.6) |
A | Glyco_hydro_38 | e3buiA3 | A: a/b barrels | X: TIM beta/alpha-barrel | H: Glycoside hydrolase/deacetylase (From Topology) | T: Glycoside hydrolase/deacetylase | F: Glyco_hydro_38 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.20.110.10 | Alpha Beta | Alpha-Beta Barrel | 7-stranded beta/alpha barrel | Glycoside hydrolase 38, N terminal domain | CATH (4.3.0) |
A | 1.20.1270.50 | Mainly Alpha | Up-down Bundle | Substrate Binding Domain Of Dnak | Chain:A | CATH (4.3.0) |
A | 2.60.40.1180 | Mainly Beta | Sandwich | Immunoglobulin-like | Golgi alpha-mannosidase II | CATH (4.3.0) |
A | 2.70.98.30 | Mainly Beta | Distorted Sandwich | Beta-galactosidase | Chain A, domain 5 | CATH (4.3.0) |
A | 2.60.40.1360 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF18230 | Glycosyl hydrolases family 38 C-terminal sub-domain (Glyc_hyd_38C_2) | Glycosyl hydrolases family 38 C-terminal sub-domain | This is a subdomain found in the C-terminal region of golgi alpha-mannosidase II present in Drosophila melanogaster. These proteins are important in glycoprotein processing and are thought to cleave mannosidic bonds through a double displacement mech ... | Domain | |
PF01074 | Glycosyl hydrolases family 38 N-terminal domain (Glyco_hydro_38N) | Glycosyl hydrolases family 38 N-terminal domain | Glycosyl hydrolases are key enzymes of carbohydrate metabolism. | Domain | |
PF21260 | Lysosomal alpha-mannosidase-like, central domain (Laman-like_dom) | Lysosomal alpha-mannosidase-like, central domain | This domain is found in Lysosomal alpha-mannosidase from Bos taurus (Laman) and similar proteins from eukaryotes. This protein is necessary for the catabolism of N-linked carbohydrates released during glycoprotein turnover. Laman, which belongs to th ... | Domain | |
PF09261 | Alpha mannosidase middle domain (Alpha-mann_mid) | Alpha mannosidase middle domain | Members of this family adopt a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold. They are predominantly found in the enzyme alpha-mannosidase [1]. | Domain | |
PF07748 | Glycosyl hydrolases family 38 C-terminal domain (Glyco_hydro_38C) | Glycosyl hydrolases family 38 C-terminal domain | Glycosyl hydrolases are key enzymes of carbohydrate metabolism. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR015341 | Glycoside hydrolase family 38, central domain | Domain | |
IPR041566 | Alpha-mannosidase 2, C-terminal sub-domain | Domain | |
IPR013780 | Glycosyl hydrolase, all-beta | Homologous Superfamily | |
IPR027291 | Glycoside hydrolase 38, N-terminal domain superfamily | Homologous Superfamily | |
IPR037094 | Glycoside hydrolase family 38, central domain superfamily | Homologous Superfamily | |
IPR028995 | Glycoside hydrolase families 57/38, central domain superfamily | Homologous Superfamily | |
IPR050843 | Glycosyl Hydrolase Family 38 | Family | |
IPR048534 | Lysosomal alpha-mannosidase-like, central domain | Domain | |
IPR011330 | Glycoside hydrolase/deacetylase, beta/alpha-barrel | Homologous Superfamily | |
IPR011682 | Glycosyl hydrolase family 38, C-terminal | Domain | |
IPR000602 | Glycoside hydrolase family 38, N-terminal domain | Domain | |
IPR011013 | Galactose mutarotase-like domain superfamily | Homologous Superfamily |