Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Bd3wqpb2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain automated matches automated matches (Thermococcus kodakarensis KOD1 ) [TaxId: 69014 ], SCOPe (2.08)
Bd3wqpb1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Thermococcus kodakarensis KOD1 ) [TaxId: 69014 ], SCOPe (2.08)
Dd3wqpd2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain automated matches automated matches (Thermococcus kodakarensis KOD1 ) [TaxId: 69014 ], SCOPe (2.08)
Dd3wqpd1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Thermococcus kodakarensis KOD1 ) [TaxId: 69014 ], SCOPe (2.08)
Ad3wqpa2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain automated matches automated matches (Thermococcus kodakarensis KOD1 ) [TaxId: 69014 ], SCOPe (2.08)
Ad3wqpa1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Thermococcus kodakarensis KOD1 ) [TaxId: 69014 ], SCOPe (2.08)
Cd3wqpc2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain automated matches automated matches (Thermococcus kodakarensis KOD1 ) [TaxId: 69014 ], SCOPe (2.08)
Cd3wqpc1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Thermococcus kodakarensis KOD1 ) [TaxId: 69014 ], SCOPe (2.08)
Ed3wqpe2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain automated matches automated matches (Thermococcus kodakarensis KOD1 ) [TaxId: 69014 ], SCOPe (2.08)
Ed3wqpe1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Thermococcus kodakarensis KOD1 ) [TaxId: 69014 ], SCOPe (2.08)
Fd3wqpf2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain automated matches automated matches (Thermococcus kodakarensis KOD1 ) [TaxId: 69014 ], SCOPe (2.08)
Fd3wqpf1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Thermococcus kodakarensis KOD1 ) [TaxId: 69014 ], SCOPe (2.08)
Gd3wqpg2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain automated matches automated matches (Thermococcus kodakarensis KOD1 ) [TaxId: 69014 ], SCOPe (2.08)
Gd3wqpg1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Thermococcus kodakarensis KOD1 ) [TaxId: 69014 ], SCOPe (2.08)
Hd3wqph2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain automated matches automated matches (Thermococcus kodakarensis KOD1 ) [TaxId: 69014 ], SCOPe (2.08)
Hd3wqph1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Thermococcus kodakarensis KOD1 ) [TaxId: 69014 ], SCOPe (2.08)
Id3wqpi2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain automated matches automated matches (Thermococcus kodakarensis KOD1 ) [TaxId: 69014 ], SCOPe (2.08)
Id3wqpi1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Thermococcus kodakarensis KOD1 ) [TaxId: 69014 ], SCOPe (2.08)
Jd3wqpj2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain automated matches automated matches (Thermococcus kodakarensis KOD1 ) [TaxId: 69014 ], SCOPe (2.08)
Jd3wqpj1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Thermococcus kodakarensis KOD1 ) [TaxId: 69014 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyRuBisCO, large subunit, small (N-terminal) domain 8035844 3001258 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyRuBisCo, C-terminal domain 8035841 3000552 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyRuBisCo, C-terminal domain 8035841 3000552 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyRuBisCO, large subunit, small (N-terminal) domain 8035844 3001258 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyRuBisCO, large subunit, small (N-terminal) domain 8035844 3001258 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyRuBisCo, C-terminal domain 8035841 3000552 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyRuBisCo, C-terminal domain 8035841 3000552 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyRuBisCO, large subunit, small (N-terminal) domain 8035844 3001258 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyRuBisCo, C-terminal domain 8035841 3000552 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyRuBisCO, large subunit, small (N-terminal) domain 8035844 3001258 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyRuBisCo, C-terminal domain 8035841 3000552 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyRuBisCO, large subunit, small (N-terminal) domain 8035844 3001258 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyRuBisCO, large subunit, small (N-terminal) domain 8035844 3001258 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyRuBisCo, C-terminal domain 8035841 3000552 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyRuBisCO, large subunit, small (N-terminal) domain 8035844 3001258 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyRuBisCo, C-terminal domain 8035841 3000552 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyRuBisCO, large subunit, small (N-terminal) domain 8035844 3001258 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyRuBisCo, C-terminal domain 8035841 3000552 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyRuBisCo, C-terminal domain 8035841 3000552 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyRuBisCO, large subunit, small (N-terminal) domain 8035844 3001258 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BRuBisCO_large_Ne3wqpB1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
BRuBisCO_largee3wqpB2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)
DRuBisCO_large_Ne3wqpD1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
DRuBisCO_largee3wqpD2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)
ARuBisCO_large_Ne3wqpA1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
ARuBisCO_largee3wqpA2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)
CRuBisCO_large_Ne3wqpC1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
CRuBisCO_largee3wqpC2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)
ERuBisCO_large_Ne3wqpE1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
ERuBisCO_largee3wqpE2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)
FRuBisCO_large_Ne3wqpF1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
FRuBisCO_largee3wqpF2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)
GRuBisCO_large_Ne3wqpG1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
GRuBisCO_largee3wqpG2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)
HRuBisCO_large_Ne3wqpH2 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
HRuBisCO_largee3wqpH1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)
IRuBisCO_large_Ne3wqpI2 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
IRuBisCO_largee3wqpI1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)
JRuBisCO_large_Ne3wqpJ1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
JRuBisCO_largee3wqpJ2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
B3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
D3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
D3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
A3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
A3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
C3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
C3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
E3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
E3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
F3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
F3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
G3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
G3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
H3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
H3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
I3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
I3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
J3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
J3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF02788Ribulose bisphosphate carboxylase large chain, N-terminal domain (RuBisCO_large_N)Ribulose bisphosphate carboxylase large chain, N-terminal domainThe N-terminal domain of RuBisCO large chain adopts a ferredoxin-like fold.Domain
A, B, C, D, E
PF00016Ribulose bisphosphate carboxylase large chain, catalytic domain (RuBisCO_large)Ribulose bisphosphate carboxylase large chain, catalytic domainThe C-terminal domain of RuBisCO large chain is the catalytic domain adopting a TIM barrel fold.Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
Ribulose bisphosphate carboxylase -