4E7A

Crystal structure of a product state assembly of HCV NS5B genotype 2a JFH-1 isolate with beta hairpin deletion bound to primer-template RNA with a 2',3'-ddC


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
C [auth A]RdRP_3_2nde4e7aA1 A: alpha bundlesX: helical bundle domain in reverse transcriptase-like polymerases (From Topology)H: helical bundle domain in reverse transcriptase-like polymerases (From Topology)T: helical bundle domain in reverse transcriptase-like polymerasesF: RdRP_3_2ndECOD (1.6)
C [auth A]RdRP_3_1ste4e7aA2 A: a+b two layersX: Alpha-beta plaitsH: Adenylyl and guanylyl cyclase catalytic domain-likeT: Adenylyl and guanylyl cyclase catalytic domain-likeF: RdRP_3_1stECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C [auth A]PF00998Viral RNA dependent RNA polymerase (RdRP_3)Viral RNA dependent RNA polymerase- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C [auth A]RNA-directed RNA polymerase
A [auth T],
B [auth P]
5'-R(*CP*AP*UP*GP*GP*C)-D(P*(DOC))-3'---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C [auth A]IPR002522Hepatitis C virus, Core protein, N-terminalDomain
C [auth A]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
C [auth A]IPR054175NS3 RNA helicase, C-terminal helical domainDomain
C [auth A]IPR038568Hepatitis C virus NS5A, 1B domain superfamilyHomologous Superfamily
C [auth A]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
C [auth A]IPR009003Peptidase S1, PA clanHomologous Superfamily
C [auth A]IPR001650Helicase, C-terminal domain-likeDomain
C [auth A]IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
C [auth A]IPR002868Hepatitis C virus, Non-structural 5a proteinDomain
C [auth A]IPR038170NS5A domain 1a superfamilyHomologous Superfamily
C [auth A]IPR002518Hepatitis C virus, Non-structural protein NS2Domain
C [auth A]IPR013192Hepatitis C virus, Non-structural 5a protein, domain 1aDomain
C [auth A]IPR002521Hepatitis C virus, Core protein, C-terminalDomain
C [auth A]IPR042209Hepatitis C virus non-structural protein NS2, N-terminal domainHomologous Superfamily
C [auth A]IPR000745Hepatitis C virus, Non-structural protein NS4aDomain
C [auth A]IPR011492Non-structural protein NS3-like, DEAD box helicase, flavivirusDomain
C [auth A]IPR042205Hepatitis C virus non-structural protein NS2, C-terminal domainHomologous Superfamily
C [auth A]IPR002166RNA dependent RNA polymerase, hepatitis C virusFamily
C [auth A]IPR002519Hepatitis C virus, Envelope glycoprotein E1Domain
C [auth A]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
C [auth A]IPR044896Hepatitis C virus core protein, chain A superfamilyHomologous Superfamily
C [auth A]IPR024350Hepatitus C virus, Non-structural 5a protein, C-terminalDomain
C [auth A]IPR013193Hepatitis C virus non-structural 5a, 1B domainDomain
C [auth A]IPR004109Hepatitis C virus, NS3 proteaseDomain
C [auth A]IPR049913Hepatitis C virus, p7 channelDomain
C [auth A]IPR002531Hepatitis C virus, Non-structural protein E2/NS1Domain
C [auth A]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
C [auth A]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
C [auth A]IPR001490Hepatitis C virus, Non-structural protein NS4bDomain