4N90
Crystal structure of ternary complex of TRAIL, DR5, and Fab fragment from a DR5 agonist antibody
External Resource: Annotation
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- IMGT Antibody Annotation
- SAbDab Antibody Annotation
- Thera-SAbDab Antibody Annotation
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Pharos: Disease Associations
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth R] | SCOP2B Superfamily | TNF receptor-like | 8038905 | 3000971 | SCOP2B (2022-06-29) |
A [auth R] | SCOP2B Superfamily | TNF receptor-like | 8038907 | 3000971 | SCOP2B (2022-06-29) |
A [auth R] | SCOP2B Superfamily | TNF receptor-like | 8038908 | 3000971 | SCOP2B (2022-06-29) |
B [auth S] | SCOP2B Superfamily | TNF receptor-like | 8038907 | 3000971 | SCOP2B (2022-06-29) |
B [auth S] | SCOP2B Superfamily | TNF receptor-like | 8038905 | 3000971 | SCOP2B (2022-06-29) |
B [auth S] | SCOP2B Superfamily | TNF receptor-like | 8038908 | 3000971 | SCOP2B (2022-06-29) |
C [auth T] | SCOP2B Superfamily | TNF receptor-like | 8038905 | 3000971 | SCOP2B (2022-06-29) |
C [auth T] | SCOP2B Superfamily | TNF receptor-like | 8038908 | 3000971 | SCOP2B (2022-06-29) |
C [auth T] | SCOP2B Superfamily | TNF receptor-like | 8038907 | 3000971 | SCOP2B (2022-06-29) |
E [auth B] | SCOP2B Superfamily | TNF-like | 8041237 | 3000061 | SCOP2B (2022-06-29) |
D [auth A] | SCOP2B Superfamily | TNF-like | 8041237 | 3000061 | SCOP2B (2022-06-29) |
F [auth C] | SCOP2B Superfamily | TNF-like | 8041237 | 3000061 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth R] | F_UNCLASSIFIED | e4n90R3 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: TNF receptor-like | F: F_UNCLASSIFIED | ECOD (1.6) |
A [auth R] | PF00020 | e4n90R2 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: TNF receptor-like | F: PF00020 | ECOD (1.6) |
B [auth S] | F_UNCLASSIFIED | e4n90S3 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: TNF receptor-like | F: F_UNCLASSIFIED | ECOD (1.6) |
B [auth S] | PF00020 | e4n90S2 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: TNF receptor-like | F: PF00020 | ECOD (1.6) |
C [auth T] | F_UNCLASSIFIED | e4n90T3 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: TNF receptor-like | F: F_UNCLASSIFIED | ECOD (1.6) |
C [auth T] | PF00020 | e4n90T2 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: TNF receptor-like | F: PF00020 | ECOD (1.6) |
E [auth B] | PF00229 | e4n90B1 | A: beta sandwiches | X: jelly-roll | H: TNF-like (From Topology) | T: TNF-like | F: PF00229 | ECOD (1.6) |
D [auth A] | PF00229 | e4n90A1 | A: beta sandwiches | X: jelly-roll | H: TNF-like (From Topology) | T: TNF-like | F: PF00229 | ECOD (1.6) |
F [auth C] | PF00229 | e4n90C1 | A: beta sandwiches | X: jelly-roll | H: TNF-like (From Topology) | T: TNF-like | F: PF00229 | ECOD (1.6) |
G [auth E] | PF07654 | e4n90E2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
G [auth E] | PF07686 | e4n90E1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
I [auth G] | PF07654 | e4n90G2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
I [auth G] | PF07686 | e4n90G1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
K [auth I] | PF07654 | e4n90I2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
K [auth I] | PF07686 | e4n90I1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
H [auth D] | PF07654 | e4n90D2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
H [auth D] | PF07686 | e4n90D1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
J [auth F] | PF07654 | e4n90F2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
J [auth F] | PF07686 | e4n90F1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
L [auth H] | PF07654 | e4n90H2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
L [auth H] | PF07686 | e4n90H1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
G [auth E], I [auth G], K [auth I] | DR5 Fab | L-KAPPA | Homo sapiens (human) | IGKV3-20*01, IGKJ1*01, IGKC*01 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | FAB-GAMMA-1_KAPPA | IMGT (202422-0) |
H [auth D], J [auth F], L [auth H] | DR5 Fab | VH-CH1 | Homo sapiens (human) | IGHV4-30-4*01, IGHJ6*01, IGHJ6*02, IGHG1*01, IGHG1*02, IGHG1*04 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_KAPPA | IMGT (202422-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
G [auth E], I [auth G], K [auth I] | Light Chain | IGKV3 | Kappa | tumor necrosis factor receptor superfamily member 10b | tumor necrosis factor ligand superfamily member 10 | SAbDab (2024-06-07) |
H [auth D], J [auth F], L [auth H] | Heavy Chain | IGHV4 | - | tumor necrosis factor receptor superfamily member 10b | tumor necrosis factor ligand superfamily member 10 | SAbDab (2024-06-07) |
Thera-SAbDab Antibody Annotation Thera-SAbDab Database Homepage
Chain | Name | Target | Provenance Source |
---|---|---|---|
G [auth E], I [auth G], K [auth I] | Conatumumab | TNFRSF10B/CD262/DR5/TRAILR2 | Therapeutic SAbDab (2024-06-07) |
H [auth D], J [auth F], L [auth H] | Conatumumab | TNFRSF10B/CD262/DR5/TRAILR2 | Therapeutic SAbDab (2024-06-07) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth R], B [auth S], C [auth T] | PF00020 | TNFR/NGFR cysteine-rich region (TNFR_c6) | TNFR/NGFR cysteine-rich region | - | Domain |
D [auth A], E [auth B], F [auth C] | PF00229 | TNF(Tumour Necrosis Factor) family (TNF) | TNF(Tumour Necrosis Factor) family | - | Domain |