Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth C]PF00607e4nx4C1 A: alpha bundlesX: Retrovirus capsid proteinH: Retrovirus capsid protein N-terminal domain (From Topology)T: Retrovirus capsid protein N-terminal domainF: PF00607ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A [auth C]1.10.375.10 Mainly Alpha Orthogonal Bundle Human Immunodeficiency Virus Type 1 Capsid Protein Human Immunodeficiency Virus Type 1 Capsid ProteinCATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth C]Gag-Pol polyprotein

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth C]IPR036397Ribonuclease H superfamilyHomologous Superfamily
A [auth C]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
A [auth C]IPR001995Peptidase A2A, retrovirus, catalyticDomain
A [auth C]IPR001878Zinc finger, CCHC-typeDomain
A [auth C]IPR008919Retrovirus capsid, N-terminalHomologous Superfamily
A [auth C]IPR012344Matrix protein, lentiviral and alpha-retroviral, N-terminalHomologous Superfamily
A [auth C]IPR036862Integrase, C-terminal domain superfamily, retroviralHomologous Superfamily
A [auth C]IPR018061RetropepsinsDomain
A [auth C]IPR010661Reverse transcriptase thumbDomain
A [auth C]IPR002156Ribonuclease H domainDomain
A [auth C]IPR036875Zinc finger, CCHC-type superfamilyHomologous Superfamily
A [auth C]IPR003308Integrase, N-terminal zinc-binding domainDomain
A [auth C]IPR001584Integrase, catalytic coreDomain
A [auth C]IPR045345Retroviral nucleocapsid Gag protein p24, C-terminal domainDomain
A [auth C]IPR010999Retroviral matrix proteinHomologous Superfamily
A [auth C]IPR021109Aspartic peptidase domain superfamilyHomologous Superfamily
A [auth C]IPR001969Aspartic peptidase, active siteActive Site
A [auth C]IPR012337Ribonuclease H-like superfamilyHomologous Superfamily
A [auth C]IPR017856Integrase-like, N-terminalHomologous Superfamily
A [auth C]IPR000071Immunodeficiency lentiviral matrix, N-terminalDomain
A [auth C]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
A [auth C]IPR001037Integrase, C-terminal, retroviralDomain
A [auth C]IPR034170Retropepsin-like catalytic domainDomain
A [auth C]IPR000477Reverse transcriptase domainDomain
A [auth C]IPR010659Reverse transcriptase connectionDomain
A [auth C]IPR008916Retrovirus capsid, C-terminalHomologous Superfamily