4U1V
Crystal structure of the E. coli ribosome bound to linopristin.
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
J [auth AJ] | SCOP2B Superfamily | Ribosomal protein S10 | 8102681 | 3001336 | SCOP2B (2021-05-27) |
LB [auth CJ] | SCOP2B Superfamily | Ribosomal protein S10 | 8102681 | 3001336 | SCOP2B (2021-05-27) |
K [auth AK] | SCOP2B Superfamily | Translational machinery components | 8035368 | 3000571 | SCOP2B (2021-05-27) |
MB [auth CK] | SCOP2B Superfamily | Translational machinery components | 8035368 | 3000571 | SCOP2B (2021-05-27) |
NB [auth CL] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8094649 | 3000135 | SCOP2B (2021-05-27) |
L [auth AL] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8094649 | 3000135 | SCOP2B (2021-05-27) |
M [auth AM] | SCOP2B Superfamily | S13-like H2TH domain | 8098358 | 3000053 | SCOP2B (2021-05-27) |
OB [auth CM] | SCOP2B Superfamily | S13-like H2TH domain | 8098358 | 3000053 | SCOP2B (2021-05-27) |
N [auth AN] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8052568 | 3000068 | SCOP2B (2021-05-27) |
PB [auth CN] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8052568 | 3000068 | SCOP2B (2021-05-27) |
QB [auth CO] | SCOP2B Superfamily | S15/NS1 RNA-binding domain | 8032375 | 3001284 | SCOP2B (2021-05-27) |
O [auth AO] | SCOP2B Superfamily | S15/NS1 RNA-binding domain | 8032375 | 3001284 | SCOP2B (2021-05-27) |
RB [auth CP] | SCOP2B Superfamily | Ribosomal protein S16 | 8066563 | 3000680 | SCOP2B (2021-05-27) |
P [auth AP] | SCOP2B Superfamily | Ribosomal protein S16 | 8066563 | 3000680 | SCOP2B (2021-05-27) |
Q [auth AQ] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8059276 | 3000135 | SCOP2B (2021-05-27) |
SB [auth CQ] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8059276 | 3000135 | SCOP2B (2021-05-27) |
B [auth AB] | SCOP2B Superfamily | SIS domain/Ribosomal protein S2-like | 8063838 | 3001397 | SCOP2B (2021-05-27) |
DB [auth CB] | SCOP2B Superfamily | SIS domain/Ribosomal protein S2-like | 8063838 | 3001397 | SCOP2B (2021-05-27) |
U [auth AU] | SCOP2B Superfamily | Ribosomal protein S21 | 8053090 | 3002159 | SCOP2B (2021-05-27) |
WB [auth CU] | SCOP2B Superfamily | Ribosomal protein S21 | 8053090 | 3002159 | SCOP2B (2021-05-27) |
ZB [auth DC] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8035393 | 3000334 | SCOP2B (2021-05-27) |
ZB [auth DC] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8035394 | 3000135 | SCOP2B (2021-05-27) |
X [auth BC] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8035394 | 3000135 | SCOP2B (2021-05-27) |
X [auth BC] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8035393 | 3000334 | SCOP2B (2021-05-27) |
Y [auth BD] | SCOP2B Superfamily | Translational proteins | 8032955 | 3000811 | SCOP2B (2021-05-27) |
AC [auth DD] | SCOP2B Superfamily | Translational proteins | 8032955 | 3000811 | SCOP2B (2021-05-27) |
BC [auth DE] | SCOP2B Superfamily | Ribosomal protein L4 | 8096356 | 3001146 | SCOP2B (2021-05-27) |
Z [auth BE] | SCOP2B Superfamily | Ribosomal protein L4 | 8096356 | 3001146 | SCOP2B (2021-05-27) |
AA [auth BF] | SCOP2B Superfamily | RL5-like | 8096352 | 3001709 | SCOP2B (2021-05-27) |
CC [auth DF] | SCOP2B Superfamily | RL5-like | 8096352 | 3001709 | SCOP2B (2021-05-27) |
BA [auth BG] | SCOP2B Superfamily | Ribosomal protein L6 | 8035397 | 3000724 | SCOP2B (2021-05-27) |
BA [auth BG] | SCOP2B Superfamily | Ribosomal protein L6 | 8035398 | 3000724 | SCOP2B (2021-05-27) |
DC [auth DG] | SCOP2B Superfamily | Ribosomal protein L6 | 8035398 | 3000724 | SCOP2B (2021-05-27) |
DC [auth DG] | SCOP2B Superfamily | Ribosomal protein L6 | 8035397 | 3000724 | SCOP2B (2021-05-27) |
CA [auth BH] | SCOP2B Superfamily | Ribosomal protein L9 C-domain | 8032958 | 3000329 | SCOP2B (2021-05-27) |
CA [auth BH] | SCOP2B Superfamily | L9 N-domain-like | 8032960 | 3000338 | SCOP2B (2021-05-27) |
EC [auth DH] | SCOP2B Superfamily | Ribosomal protein L9 C-domain | 8032958 | 3000329 | SCOP2B (2021-05-27) |
EC [auth DH] | SCOP2B Superfamily | L9 N-domain-like | 8032960 | 3000338 | SCOP2B (2021-05-27) |
FC [auth DI] | SCOP2B Superfamily | Ribosomal protein L11 C-terminal domain | 8032961 | 3001186 | SCOP2B (2021-05-27) |
FC [auth DI] | SCOP2B Superfamily | Ribosomal L11/L12e N-terminal domain-like | 8032963 | 3000950 | SCOP2B (2021-05-27) |
DA [auth BI] | SCOP2B Superfamily | Ribosomal L11/L12e N-terminal domain-like | 8032963 | 3000950 | SCOP2B (2021-05-27) |
DA [auth BI] | SCOP2B Superfamily | Ribosomal protein L11 C-terminal domain | 8032961 | 3001186 | SCOP2B (2021-05-27) |
EA [auth BJ] | SCOP2B Superfamily | Ribosomal protein L13 | 8096350 | 3001134 | SCOP2B (2021-05-27) |
GC [auth DJ] | SCOP2B Superfamily | Ribosomal protein L13 | 8096350 | 3001134 | SCOP2B (2021-05-27) |
FA [auth BK] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8098412 | 3000433 | SCOP2B (2021-05-27) |
HC [auth DK] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8098412 | 3000433 | SCOP2B (2021-05-27) |
GA [auth BL] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8070553 | 3001045 | SCOP2B (2021-05-27) |
IC [auth DL] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8070553 | 3001045 | SCOP2B (2021-05-27) |
JC [auth DM] | SCOP2B Superfamily | Ribosomal protein L16p/L10e | 8096366 | 3000884 | SCOP2B (2021-05-27) |
HA [auth BM] | SCOP2B Superfamily | Ribosomal protein L16p/L10e | 8096366 | 3000884 | SCOP2B (2021-05-27) |
IA [auth BN] | SCOP2B Superfamily | Prokaryotic ribosomal protein L17 | 8035409 | 3000995 | SCOP2B (2021-05-27) |
KC [auth DN] | SCOP2B Superfamily | Prokaryotic ribosomal protein L17 | 8035409 | 3000995 | SCOP2B (2021-05-27) |
JA [auth BO] | SCOP2B Superfamily | Translational machinery components | 8032969 | 3000571 | SCOP2B (2021-05-27) |
LC [auth DO] | SCOP2B Superfamily | Translational machinery components | 8032969 | 3000571 | SCOP2B (2021-05-27) |
KA [auth BP] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8096364 | 3000334 | SCOP2B (2021-05-27) |
MC [auth DP] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8096364 | 3000334 | SCOP2B (2021-05-27) |
NC [auth DQ] | SCOP2B Superfamily | Ribosomal protein L20 | 8096382 | 3000563 | SCOP2B (2021-05-27) |
LA [auth BQ] | SCOP2B Superfamily | Ribosomal protein L20 | 8096382 | 3000563 | SCOP2B (2021-05-27) |
MA [auth BR] | SCOP2B Superfamily | l21p-like | 8096354 | 3002005 | SCOP2B (2021-05-27) |
OC [auth DR] | SCOP2B Superfamily | l21p-like | 8096354 | 3002005 | SCOP2B (2021-05-27) |
D [auth AD] | SCOP2B Superfamily | Alpha-L RNA-binding motif | 8083400 | 3001473 | SCOP2B (2021-05-27) |
FB [auth CD] | SCOP2B Superfamily | Alpha-L RNA-binding motif | 8083400 | 3001473 | SCOP2B (2021-05-27) |
NA [auth BS] | SCOP2B Superfamily | Ribosomal protein L22 | 8096336 | 3001078 | SCOP2B (2021-05-27) |
PC [auth DS] | SCOP2B Superfamily | Ribosomal protein L22 | 8096336 | 3001078 | SCOP2B (2021-05-27) |
QC [auth DT] | SCOP2B Superfamily | Ribosomal proteins S24e L23 and L15e | 8035415 | 3000210 | SCOP2B (2021-05-27) |
OA [auth BT] | SCOP2B Superfamily | Ribosomal proteins S24e L23 and L15e | 8035415 | 3000210 | SCOP2B (2021-05-27) |
PA [auth BU] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8096358 | 3000334 | SCOP2B (2021-05-27) |
RC [auth DU] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8096358 | 3000334 | SCOP2B (2021-05-27) |
QA [auth BV] | SCOP2B Superfamily | Ribosomal protein L25-like | 8042538 | 3001161 | SCOP2B (2021-05-27) |
SC [auth DV] | SCOP2B Superfamily | Ribosomal protein L25-like | 8042538 | 3001161 | SCOP2B (2021-05-27) |
RA [auth BW] | SCOP2B Superfamily | Ribosomal L27 protein-like | 8096338 | 3000539 | SCOP2B (2021-05-27) |
TC [auth DW] | SCOP2B Superfamily | Ribosomal L27 protein-like | 8096338 | 3000539 | SCOP2B (2021-05-27) |
SA [auth BX] | SCOP2B Superfamily | L28p-like | 8035424 | 3001966 | SCOP2B (2021-05-27) |
UC [auth DX] | SCOP2B Superfamily | L28p-like | 8035424 | 3001966 | SCOP2B (2021-05-27) |
TA [auth BY] | SCOP2B Superfamily | Ribosomal protein L29 (L29p) | 8096370 | 3000713 | SCOP2B (2021-05-27) |
VC [auth DY] | SCOP2B Superfamily | Ribosomal protein L29 (L29p) | 8096370 | 3000713 | SCOP2B (2021-05-27) |
UA [auth BZ] | SCOP2B Superfamily | Ribosomal protein L30p/L7e | 8096372 | 3001378 | SCOP2B (2021-05-27) |
WC [auth DZ] | SCOP2B Superfamily | Ribosomal protein L30p/L7e | 8096372 | 3001378 | SCOP2B (2021-05-27) |
XC [auth D0] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8096380 | 3001320 | SCOP2B (2021-05-27) |
VA [auth B0] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8096380 | 3001320 | SCOP2B (2021-05-27) |
WA [auth B1] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8096362 | 3001320 | SCOP2B (2021-05-27) |
YC [auth D1] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8096362 | 3001320 | SCOP2B (2021-05-27) |
AD [auth D3] | SCOP2B Superfamily | L35p-like | 8035388 | 3000790 | SCOP2B (2021-05-27) |
YA [auth B3] | SCOP2B Superfamily | L35p-like | 8035388 | 3000790 | SCOP2B (2021-05-27) |
BD [auth D4] | SCOP2B Superfamily | Ribosomal protein L36 | 8035391 | 3001346 | SCOP2B (2021-05-27) |
ZA [auth B4] | SCOP2B Superfamily | Ribosomal protein L36 | 8035391 | 3001346 | SCOP2B (2021-05-27) |
HB [auth CF] | SCOP2B Superfamily | Ribosomal protein S6 | 8066495 | 3001323 | SCOP2B (2021-05-27) |
F [auth AF] | SCOP2B Superfamily | Ribosomal protein S6 | 8066495 | 3001323 | SCOP2B (2021-05-27) |
G [auth AG] | SCOP2B Superfamily | Ribosomal protein S7 | 8077979 | 3000799 | SCOP2B (2021-05-27) |
IB [auth CG] | SCOP2B Superfamily | Ribosomal protein S7 | 8077979 | 3000799 | SCOP2B (2021-05-27) |
H [auth AH] | SCOP2B Superfamily | Ribosomal protein S8 | 8079059 | 3000709 | SCOP2B (2021-05-27) |
JB [auth CH] | SCOP2B Superfamily | Ribosomal protein S8 | 8079059 | 3000709 | SCOP2B (2021-05-27) |
I [auth AI] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8082661 | 3000100 | SCOP2B (2021-05-27) |
KB [auth CI] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8082661 | 3000100 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
J [auth AJ] | PF00338 | e4u1vAJ1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S10 (From Topology) | T: Ribosomal protein S10 | F: PF00338 | ECOD (1.6) |
LB [auth CJ] | PF00338 | e4u1vCJ1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S10 (From Topology) | T: Ribosomal protein S10 | F: PF00338 | ECOD (1.6) |
K [auth AK] | PF00411 | e4u1vAK1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00411 | ECOD (1.6) |
MB [auth CK] | PF00411 | e4u1vCK1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00411 | ECOD (1.6) |
NB [auth CL] | PF00164 | e4u1vCL1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00164 | ECOD (1.6) |
L [auth AL] | PF00164 | e4u1vAL1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00164 | ECOD (1.6) |
M [auth AM] | PF00416 | e4u1vAM1 | A: alpha arrays | X: HhH/H2TH | H: H2TH (From Topology) | T: H2TH | F: PF00416 | ECOD (1.6) |
OB [auth CM] | PF00416 | e4u1vCM1 | A: alpha arrays | X: HhH/H2TH | H: H2TH (From Topology) | T: H2TH | F: PF00416 | ECOD (1.6) |
N [auth AN] | PF00253 | e4u1vAN1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: PF00253 | ECOD (1.6) |
PB [auth CN] | PF00253 | e4u1vCN1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: PF00253 | ECOD (1.6) |
QB [auth CO] | PF00312 | e4u1vCO1 | A: alpha arrays | X: S15/NS1 RNA-binding domain (From Topology) | H: S15/NS1 RNA-binding domain (From Topology) | T: S15/NS1 RNA-binding domain | F: PF00312 | ECOD (1.6) |
O [auth AO] | PF00312 | e4u1vAO1 | A: alpha arrays | X: S15/NS1 RNA-binding domain (From Topology) | H: S15/NS1 RNA-binding domain (From Topology) | T: S15/NS1 RNA-binding domain | F: PF00312 | ECOD (1.6) |
RB [auth CP] | PF00886 | e4u1vCP1 | A: a+b two layers | X: Ribosomal protein S16 (From Topology) | H: Ribosomal protein S16 (From Topology) | T: Ribosomal protein S16 | F: PF00886 | ECOD (1.6) |
P [auth AP] | PF00886 | e4u1vAP1 | A: a+b two layers | X: Ribosomal protein S16 (From Topology) | H: Ribosomal protein S16 (From Topology) | T: Ribosomal protein S16 | F: PF00886 | ECOD (1.6) |
Q [auth AQ] | PF00366 | e4u1vAQ1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00366 | ECOD (1.6) |
SB [auth CQ] | PF00366 | e4u1vCQ1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00366 | ECOD (1.6) |
R [auth AR] | PF01084 | e4u1vAR1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PF01084 | ECOD (1.6) |
TB [auth CR] | PF01084 | e4u1vCR1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PF01084 | ECOD (1.6) |
S [auth AS] | PF00203 | e4u1vAS1 | A: a+b two layers | X: Ribosomal protein S19 (From Topology) | H: Ribosomal protein S19 (From Topology) | T: Ribosomal protein S19 | F: PF00203 | ECOD (1.6) |
UB [auth CS] | PF00203 | e4u1vCS1 | A: a+b two layers | X: Ribosomal protein S19 (From Topology) | H: Ribosomal protein S19 (From Topology) | T: Ribosomal protein S19 | F: PF00203 | ECOD (1.6) |
B [auth AB] | PF00318 | e4u1vAB1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Ribosomal protein S2/SIS domain (From Topology) | T: Ribosomal protein S2/SIS domain | F: PF00318 | ECOD (1.6) |
DB [auth CB] | PF00318 | e4u1vCB1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Ribosomal protein S2/SIS domain (From Topology) | T: Ribosomal protein S2/SIS domain | F: PF00318 | ECOD (1.6) |
T [auth AT] | PF01649 | e4u1vAT1 | A: alpha bundles | X: Spectrin repeat-like | H: Ribosomal protein S20 (From Topology) | T: Ribosomal protein S20 | F: PF01649 | ECOD (1.6) |
VB [auth CT] | PF01649 | e4u1vCT1 | A: alpha bundles | X: Spectrin repeat-like | H: Ribosomal protein S20 (From Topology) | T: Ribosomal protein S20 | F: PF01649 | ECOD (1.6) |
U [auth AU] | PF01165 | e4u1vAU1 | A: extended segments | X: 30S ribosomal protein S21 (From Topology) | H: 30S ribosomal protein S21 (From Topology) | T: 30S ribosomal protein S21 | F: PF01165 | ECOD (1.6) |
WB [auth CU] | PF01165 | e4u1vCU1 | A: extended segments | X: 30S ribosomal protein S21 (From Topology) | H: 30S ribosomal protein S21 (From Topology) | T: 30S ribosomal protein S21 | F: PF01165 | ECOD (1.6) |
ZB [auth DC] | PF00181 | e4u1vDC1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00181 | ECOD (1.6) |
ZB [auth DC] | PF03947 | e4u1vDC2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF03947 | ECOD (1.6) |
X [auth BC] | PF00181 | e4u1vBC1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00181 | ECOD (1.6) |
X [auth BC] | PF03947 | e4u1vBC2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF03947 | ECOD (1.6) |
Y [auth BD] | PF00297 | e4u1vBD1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF00297 | ECOD (1.6) |
AC [auth DD] | PF00297 | e4u1vDD1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF00297 | ECOD (1.6) |
BC [auth DE] | PF00573 | e4u1vDE1 | A: a/b three-layered sandwiches | X: Ribosomal protein L4 (From Topology) | H: Ribosomal protein L4 (From Topology) | T: Ribosomal protein L4 | F: PF00573 | ECOD (1.6) |
Z [auth BE] | PF00573 | e4u1vBE1 | A: a/b three-layered sandwiches | X: Ribosomal protein L4 (From Topology) | H: Ribosomal protein L4 (From Topology) | T: Ribosomal protein L4 | F: PF00573 | ECOD (1.6) |
AA [auth BF] | PF00281,PF00673 | e4u1vBF1 | A: a+b two layers | X: Ribosomal protein L5 (From Topology) | H: Ribosomal protein L5 (From Topology) | T: Ribosomal protein L5 | F: PF00281,PF00673 | ECOD (1.6) |
CC [auth DF] | PF00281,PF00673 | e4u1vDF1 | A: a+b two layers | X: Ribosomal protein L5 (From Topology) | H: Ribosomal protein L5 (From Topology) | T: Ribosomal protein L5 | F: PF00281,PF00673 | ECOD (1.6) |
BA [auth BG] | PF00347 | e4u1vBG1 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: PF00347 | ECOD (1.6) |
DC [auth DG] | PF00347 | e4u1vDG1 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: PF00347 | ECOD (1.6) |
CA [auth BH] | PF01281 | e4u1vBH2 | A: a+b two layers | X: L9 N-domain-like | H: L9 N-domain-like (From Topology) | T: L9 N-domain-like | F: PF01281 | ECOD (1.6) |
CA [auth BH] | PF03948 | e4u1vBH3 | A: a+b two layers | X: Ribosomal protein L9 C-domain (From Topology) | H: Ribosomal protein L9 C-domain (From Topology) | T: Ribosomal protein L9 C-domain | F: PF03948 | ECOD (1.6) |
EC [auth DH] | PF01281 | e4u1vDH2 | A: a+b two layers | X: L9 N-domain-like | H: L9 N-domain-like (From Topology) | T: L9 N-domain-like | F: PF01281 | ECOD (1.6) |
EC [auth DH] | PF03948 | e4u1vDH3 | A: a+b two layers | X: Ribosomal protein L9 C-domain (From Topology) | H: Ribosomal protein L9 C-domain (From Topology) | T: Ribosomal protein L9 C-domain | F: PF03948 | ECOD (1.6) |
C [auth AC] | PF00189 | e4u1vAC1 | A: a+b two layers | X: T-fold | H: Ribosomal protein S3-C (From Topology) | T: Ribosomal protein S3-C | F: PF00189 | ECOD (1.6) |
C [auth AC] | PF07650 | e4u1vAC2 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: PF07650 | ECOD (1.6) |
EB [auth CC] | PF00189 | e4u1vCC1 | A: a+b two layers | X: T-fold | H: Ribosomal protein S3-C (From Topology) | T: Ribosomal protein S3-C | F: PF00189 | ECOD (1.6) |
EB [auth CC] | PF07650 | e4u1vCC2 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: PF07650 | ECOD (1.6) |
FC [auth DI] | PF00298 | e4u1vDI2 | A: alpha arrays | X: HTH | H: HTH | T: Ribosomal protein L11, C-terminal domain | F: PF00298 | ECOD (1.6) |
FC [auth DI] | PF03946 | e4u1vDI1 | A: a+b two layers | X: Ribosomal protein L11/L12e N-terminal domain-like | H: Ribosomal protein L11/L12e N-terminal domain (From Topology) | T: Ribosomal protein L11/L12e N-terminal domain | F: PF03946 | ECOD (1.6) |
DA [auth BI] | PF00298 | e4u1vBI2 | A: alpha arrays | X: HTH | H: HTH | T: Ribosomal protein L11, C-terminal domain | F: PF00298 | ECOD (1.6) |
DA [auth BI] | PF03946 | e4u1vBI1 | A: a+b two layers | X: Ribosomal protein L11/L12e N-terminal domain-like | H: Ribosomal protein L11/L12e N-terminal domain (From Topology) | T: Ribosomal protein L11/L12e N-terminal domain | F: PF03946 | ECOD (1.6) |
EA [auth BJ] | PF00572 | e4u1vBJ1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L13 and L16-A (From Topology) | T: Ribosomal protein L13 and L16-A | F: PF00572 | ECOD (1.6) |
GC [auth DJ] | PF00572 | e4u1vDJ1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L13 and L16-A (From Topology) | T: Ribosomal protein L13 and L16-A | F: PF00572 | ECOD (1.6) |
FA [auth BK] | PF00238 | e4u1vBK1 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: PF00238 | ECOD (1.6) |
HC [auth DK] | PF00238 | e4u1vDK1 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: PF00238 | ECOD (1.6) |
GA [auth BL] | PF00828 | e4u1vBL1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: PF00828 | ECOD (1.6) |
IC [auth DL] | PF00828 | e4u1vDL1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: PF00828 | ECOD (1.6) |
JC [auth DM] | PF00252 | e4u1vDM1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal protein L10e | F: PF00252 | ECOD (1.6) |
HA [auth BM] | PF00252 | e4u1vBM1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal protein L10e | F: PF00252 | ECOD (1.6) |
IA [auth BN] | PF01196 | e4u1vBN1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Prokaryotic ribosomal protein L17 (From Topology) | T: Prokaryotic ribosomal protein L17 | F: PF01196 | ECOD (1.6) |
KC [auth DN] | PF01196 | e4u1vDN1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Prokaryotic ribosomal protein L17 (From Topology) | T: Prokaryotic ribosomal protein L17 | F: PF01196 | ECOD (1.6) |
JA [auth BO] | PF00861 | e4u1vBO1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00861 | ECOD (1.6) |
LC [auth DO] | PF00861 | e4u1vDO1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00861 | ECOD (1.6) |
KA [auth BP] | PF01245 | e4u1vBP1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01245 | ECOD (1.6) |
MC [auth DP] | PF01245 | e4u1vDP1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01245 | ECOD (1.6) |
NC [auth DQ] | PF00453 | e4u1vDQ1 | A: alpha arrays | X: PABP domain-like | H: Ribosomal protein L20 (From Topology) | T: Ribosomal protein L20 | F: PF00453 | ECOD (1.6) |
LA [auth BQ] | PF00453 | e4u1vBQ1 | A: alpha arrays | X: PABP domain-like | H: Ribosomal protein L20 (From Topology) | T: Ribosomal protein L20 | F: PF00453 | ECOD (1.6) |
MA [auth BR] | PF00829 | e4u1vBR1 | A: beta barrels | X: Ribosomal protein L21p (From Topology) | H: Ribosomal protein L21p (From Topology) | T: Ribosomal protein L21p | F: PF00829 | ECOD (1.6) |
OC [auth DR] | PF00829 | e4u1vDR1 | A: beta barrels | X: Ribosomal protein L21p (From Topology) | H: Ribosomal protein L21p (From Topology) | T: Ribosomal protein L21p | F: PF00829 | ECOD (1.6) |
D [auth AD] | PF00163,PF01479 | e4u1vAD1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Alpha-L RNA-binding motif | F: PF00163,PF01479 | ECOD (1.6) |
FB [auth CD] | PF00163,PF01479 | e4u1vCD1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Alpha-L RNA-binding motif | F: PF00163,PF01479 | ECOD (1.6) |
NA [auth BS] | PF00237 | e4u1vBS1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Ribosomal protein L22 (From Topology) | T: Ribosomal protein L22 | F: PF00237 | ECOD (1.6) |
PC [auth DS] | PF00237 | e4u1vDS1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Ribosomal protein L22 (From Topology) | T: Ribosomal protein L22 | F: PF00237 | ECOD (1.6) |
QC [auth DT] | PF00276 | e4u1vDT1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: PF00276 | ECOD (1.6) |
OA [auth BT] | PF00276 | e4u1vBT1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: PF00276 | ECOD (1.6) |
PA [auth BU] | PF00467,PF17136 | e4u1vBU1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF00467,PF17136 | ECOD (1.6) |
RC [auth DU] | PF00467,PF17136 | e4u1vDU1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF00467,PF17136 | ECOD (1.6) |
QA [auth BV] | PF01386 | e4u1vBV1 | A: beta barrels | X: Ribosomal protein L25-like | H: Ribosomal protein L25-like (From Topology) | T: Ribosomal protein L25-like | F: PF01386 | ECOD (1.6) |
SC [auth DV] | PF01386 | e4u1vDV1 | A: beta barrels | X: Ribosomal protein L25-like | H: Ribosomal protein L25-like (From Topology) | T: Ribosomal protein L25-like | F: PF01386 | ECOD (1.6) |
RA [auth BW] | PF01016 | e4u1vBW1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal L27 protein | F: PF01016 | ECOD (1.6) |
TC [auth DW] | PF01016 | e4u1vDW1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal L27 protein | F: PF01016 | ECOD (1.6) |
SA [auth BX] | PF00830 | e4u1vBX1 | A: few secondary structure elements | X: Ribosomal protein bL28-related (From Homology) | H: Ribosomal protein bL28-related | T: Ribosomal protein L28 | F: PF00830 | ECOD (1.6) |
UC [auth DX] | PF00830 | e4u1vDX1 | A: few secondary structure elements | X: Ribosomal protein bL28-related (From Homology) | H: Ribosomal protein bL28-related | T: Ribosomal protein L28 | F: PF00830 | ECOD (1.6) |
TA [auth BY] | PF00831 | e4u1vBY1 | A: alpha bundles | X: Long alpha-hairpin | H: Ribosomal protein L29 (L29p) (From Topology) | T: Ribosomal protein L29 (L29p) | F: PF00831 | ECOD (1.6) |
VC [auth DY] | PF00831 | e4u1vDY1 | A: alpha bundles | X: Long alpha-hairpin | H: Ribosomal protein L29 (L29p) (From Topology) | T: Ribosomal protein L29 (L29p) | F: PF00831 | ECOD (1.6) |
UA [auth BZ] | PF00327 | e4u1vBZ1 | A: a+b two layers | X: Ribosomal protein L30p/L7e (From Topology) | H: Ribosomal protein L30p/L7e (From Topology) | T: Ribosomal protein L30p/L7e | F: PF00327 | ECOD (1.6) |
WC [auth DZ] | PF00327 | e4u1vDZ1 | A: a+b two layers | X: Ribosomal protein L30p/L7e (From Topology) | H: Ribosomal protein L30p/L7e (From Topology) | T: Ribosomal protein L30p/L7e | F: PF00327 | ECOD (1.6) |
XC [auth D0] | PF01783 | e4u1vD01 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF01783 | ECOD (1.6) |
VA [auth B0] | PF01783 | e4u1vB01 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF01783 | ECOD (1.6) |
WA [auth B1] | PF00471 | e4u1vB11 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF00471 | ECOD (1.6) |
YC [auth D1] | PF00471 | e4u1vD11 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF00471 | ECOD (1.6) |
GB [auth CE] | PF03719 | e4u1vCE1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: PF03719 | ECOD (1.6) |
GB [auth CE] | PF00333 | e4u1vCE2 | A: a+b two layers | X: dsRBD-like | H: dsRNA-binding domain-like (From Topology) | T: dsRNA-binding domain-like | F: PF00333 | ECOD (1.6) |
E [auth AE] | PF03719 | e4u1vAE1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: PF03719 | ECOD (1.6) |
E [auth AE] | PF00333 | e4u1vAE2 | A: a+b two layers | X: dsRBD-like | H: dsRNA-binding domain-like (From Topology) | T: dsRNA-binding domain-like | F: PF00333 | ECOD (1.6) |
XA [auth B2] | PF00468 | e4u1vB21 | A: extended segments | X: 50S ribosomal protein L34 (From Topology) | H: 50S ribosomal protein L34 (From Topology) | T: 50S ribosomal protein L34 | F: PF00468 | ECOD (1.6) |
ZC [auth D2] | PF00468 | e4u1vD21 | A: extended segments | X: 50S ribosomal protein L34 (From Topology) | H: 50S ribosomal protein L34 (From Topology) | T: 50S ribosomal protein L34 | F: PF00468 | ECOD (1.6) |
AD [auth D3] | PF01632 | e4u1vD31 | A: a+b two layers | X: Ribosomal protein L35p (From Topology) | H: Ribosomal protein L35p (From Topology) | T: Ribosomal protein L35p | F: PF01632 | ECOD (1.6) |
YA [auth B3] | PF01632 | e4u1vB31 | A: a+b two layers | X: Ribosomal protein L35p (From Topology) | H: Ribosomal protein L35p (From Topology) | T: Ribosomal protein L35p | F: PF01632 | ECOD (1.6) |
BD [auth D4] | PF00444 | e4u1vD41 | A: few secondary structure elements | X: Ribosomal protein L36 (From Topology) | H: Ribosomal protein L36 (From Topology) | T: Ribosomal protein L36 | F: PF00444 | ECOD (1.6) |
ZA [auth B4] | PF00444 | e4u1vB41 | A: few secondary structure elements | X: Ribosomal protein L36 (From Topology) | H: Ribosomal protein L36 (From Topology) | T: Ribosomal protein L36 | F: PF00444 | ECOD (1.6) |
AB [auth B5] | PF00687 | e4u1vB52 | A: a+b two layers | X: a+b domain in Ribosomal protein L1 (From Topology) | H: a+b domain in Ribosomal protein L1 (From Topology) | T: a+b domain in Ribosomal protein L1 | F: PF00687 | ECOD (1.6) |
AB [auth B5] | PF00687 | e4u1vB51 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Rossmann-like domain in Ribosomal protein L1 (From Topology) | T: Rossmann-like domain in Ribosomal protein L1 | F: PF00687 | ECOD (1.6) |
HB [auth CF] | PF01250 | e4u1vCF1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S6 (From Topology) | T: Ribosomal protein S6 | F: PF01250 | ECOD (1.6) |
F [auth AF] | PF01250 | e4u1vAF1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S6 (From Topology) | T: Ribosomal protein S6 | F: PF01250 | ECOD (1.6) |
G [auth AG] | PF00177 | e4u1vAG1 | A: alpha arrays | X: Ribosomal protein S7 (From Topology) | H: Ribosomal protein S7 (From Topology) | T: Ribosomal protein S7 | F: PF00177 | ECOD (1.6) |
IB [auth CG] | PF00177 | e4u1vCG1 | A: alpha arrays | X: Ribosomal protein S7 (From Topology) | H: Ribosomal protein S7 (From Topology) | T: Ribosomal protein S7 | F: PF00177 | ECOD (1.6) |
H [auth AH] | PF00410 | e4u1vAH2 | A: a+b two layers | X: R3H domain-like | H: Ribosomal protein S8, N-terminal domain (From Topology) | T: Ribosomal protein S8, N-terminal domain | F: PF00410 | ECOD (1.6) |
H [auth AH] | PF00410 | e4u1vAH1 | A: a+b two layers | X: Ribosomal protein S8, C-terminal domain (From Topology) | H: Ribosomal protein S8, C-terminal domain (From Topology) | T: Ribosomal protein S8, C-terminal domain | F: PF00410 | ECOD (1.6) |
JB [auth CH] | PF00410 | e4u1vCH2 | A: a+b two layers | X: R3H domain-like | H: Ribosomal protein S8, N-terminal domain (From Topology) | T: Ribosomal protein S8, N-terminal domain | F: PF00410 | ECOD (1.6) |
JB [auth CH] | PF00410 | e4u1vCH1 | A: a+b two layers | X: Ribosomal protein S8, C-terminal domain (From Topology) | H: Ribosomal protein S8, C-terminal domain (From Topology) | T: Ribosomal protein S8, C-terminal domain | F: PF00410 | ECOD (1.6) |
I [auth AI] | PF00380 | e4u1vAI1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: PF00380 | ECOD (1.6) |
KB [auth CI] | PF00380 | e4u1vCI1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: PF00380 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
BB [auth B6], CD [auth D6] | 004 | |
BB [auth B6], CD [auth D6] | 04X | |
BB [auth B6], CD [auth D6] | DBB | AA0112 :  (2S,3S,2'R)-3-methyllanthionine MOD:00121 | : 
BB [auth B6], CD [auth D6] | MHU | Parent Component: PHE :  AA0112 |
BB [auth B6], CD [auth D6] | MHW | AA0112 | :