4WMD
Crystal structure of catalytically inactive MERS-CoV 3CL protease (C148A) in spacegroup C2221
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d4wmda_ | All beta proteins | Trypsin-like serine proteases | Trypsin-like serine proteases | automated matches | automated matches | (Middle East respiratory syndrome-related coronavirus ) [TaxId: 1335626 ], | SCOPe (2.08) |
B | d4wmdb_ | All beta proteins | Trypsin-like serine proteases | Trypsin-like serine proteases | automated matches | automated matches | (Middle East respiratory syndrome-related coronavirus ) [TaxId: 1335626 ], | SCOPe (2.08) |
C | d4wmdc_ | All beta proteins | Trypsin-like serine proteases | Trypsin-like serine proteases | automated matches | automated matches | (Middle East respiratory syndrome-related coronavirus ) [TaxId: 1335626 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Trypsin-like serine proteases | 8076469 | 3000114 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Trypsin-like serine proteases | 8076469 | 3000114 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Trypsin-like serine proteases | 8076469 | 3000114 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Peptidase_C30_N | e4wmdA2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Peptidase_C30_N | ECOD (1.6) |
A | Peptidase_C30_C | e4wmdA1 | A: alpha arrays | X: Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain (From Topology) | H: Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain (From Topology) | T: Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain | F: Peptidase_C30_C | ECOD (1.6) |
B | Peptidase_C30_N | e4wmdB1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Peptidase_C30_N | ECOD (1.6) |
B | Peptidase_C30_C | e4wmdB2 | A: alpha arrays | X: Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain (From Topology) | H: Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain (From Topology) | T: Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain | F: Peptidase_C30_C | ECOD (1.6) |
C | Peptidase_C30_N | e4wmdC2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Peptidase_C30_N | ECOD (1.6) |
C | Peptidase_C30_C | e4wmdC1 | A: alpha arrays | X: Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain (From Topology) | H: Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain (From Topology) | T: Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain | F: Peptidase_C30_C | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.40.10.10 | Mainly Beta | Beta Barrel | Thrombin, subunit H | Trypsin-like serine proteases | CATH (4.3.0) |
A | 1.10.1840.10 | Mainly Alpha | Orthogonal Bundle | main proteinase (3clpro) structure, domain 3 | main proteinase (3clpro) structure, domain 3 | CATH (4.3.0) |
B | 2.40.10.10 | Mainly Beta | Beta Barrel | Thrombin, subunit H | Trypsin-like serine proteases | CATH (4.3.0) |
B | 1.10.1840.10 | Mainly Alpha | Orthogonal Bundle | main proteinase (3clpro) structure, domain 3 | main proteinase (3clpro) structure, domain 3 | CATH (4.3.0) |
C | 2.40.10.10 | Mainly Beta | Beta Barrel | Thrombin, subunit H | Trypsin-like serine proteases | CATH (4.3.0) |
C | 1.10.1840.10 | Mainly Alpha | Orthogonal Bundle | main proteinase (3clpro) structure, domain 3 | main proteinase (3clpro) structure, domain 3 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF05409 | Coronavirus endopeptidase C30 (Peptidase_C30) | Coronavirus endopeptidase C30 | - | Family |