5B5M
Crystal structure of the Sr-substituted LH1-RC complex from Tch. tepidum
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth C] | SCOP2B Superfamily | PRC cytochrome c repeat-like | 8090735 | 3002452 | SCOP2B (2022-06-29) |
A [auth C] | SCOP2B Superfamily | PRC cytochrome c repeat-like | 8073228 | 3002452 | SCOP2B (2022-06-29) |
KA [auth o] | SCOP2B Superfamily | PRC cytochrome c repeat-like | 8090735 | 3002452 | SCOP2B (2022-06-29) |
KA [auth o] | SCOP2B Superfamily | PRC cytochrome c repeat-like | 8073228 | 3002452 | SCOP2B (2022-06-29) |
D [auth H] | SCOP2B Superfamily | PRC-barrel domain | 8097584 | 3000637 | SCOP2B (2022-06-29) |
D [auth H] | SCOP2B Superfamily | Photosystem II reaction centre subunit H, transmembrane region | 8100954 | 3000750 | SCOP2B (2022-06-29) |
NA [auth t] | SCOP2B Superfamily | PRC-barrel domain | 8097584 | 3000637 | SCOP2B (2022-06-29) |
NA [auth t] | SCOP2B Superfamily | Photosystem II reaction centre subunit H, transmembrane region | 8100954 | 3000750 | SCOP2B (2022-06-29) |
HA [auth 8] | SCOP2B Superfamily | Light-harvesting complex subunits | 8076355 | 3000199 | SCOP2B (2022-06-29) |
JA [auth 0] | SCOP2B Superfamily | Light-harvesting complex subunits | 8076355 | 3000199 | SCOP2B (2022-06-29) |
JB [auth AL] | SCOP2B Superfamily | Light-harvesting complex subunits | 8076355 | 3000199 | SCOP2B (2022-06-29) |
R | SCOP2B Superfamily | Light-harvesting complex subunits | 8076355 | 3000199 | SCOP2B (2022-06-29) |
RA [auth q] | SCOP2B Superfamily | Light-harvesting complex subunits | 8076355 | 3000199 | SCOP2B (2022-06-29) |
BA [auth 2] | SCOP2B Superfamily | Light-harvesting complex subunits | 8076355 | 3000199 | SCOP2B (2022-06-29) |
BB [auth AD] | SCOP2B Superfamily | Light-harvesting complex subunits | 8076355 | 3000199 | SCOP2B (2022-06-29) |
DA [auth 4] | SCOP2B Superfamily | Light-harvesting complex subunits | 8076355 | 3000199 | SCOP2B (2022-06-29) |
DB [auth AF] | SCOP2B Superfamily | Light-harvesting complex subunits | 8076355 | 3000199 | SCOP2B (2022-06-29) |
F [auth B] | SCOP2B Superfamily | Light-harvesting complex subunits | 8076355 | 3000199 | SCOP2B (2022-06-29) |
FA [auth 6] | SCOP2B Superfamily | Light-harvesting complex subunits | 8076355 | 3000199 | SCOP2B (2022-06-29) |
FB [auth AH] | SCOP2B Superfamily | Light-harvesting complex subunits | 8076355 | 3000199 | SCOP2B (2022-06-29) |
H [auth E] | SCOP2B Superfamily | Light-harvesting complex subunits | 8076355 | 3000199 | SCOP2B (2022-06-29) |
HB [auth AJ] | SCOP2B Superfamily | Light-harvesting complex subunits | 8076355 | 3000199 | SCOP2B (2022-06-29) |
J [auth G] | SCOP2B Superfamily | Light-harvesting complex subunits | 8076355 | 3000199 | SCOP2B (2022-06-29) |
L [auth J] | SCOP2B Superfamily | Light-harvesting complex subunits | 8076355 | 3000199 | SCOP2B (2022-06-29) |
LB [auth e] | SCOP2B Superfamily | Light-harvesting complex subunits | 8076355 | 3000199 | SCOP2B (2022-06-29) |
N | SCOP2B Superfamily | Light-harvesting complex subunits | 8076355 | 3000199 | SCOP2B (2022-06-29) |
NB [auth g] | SCOP2B Superfamily | Light-harvesting complex subunits | 8076355 | 3000199 | SCOP2B (2022-06-29) |
P | SCOP2B Superfamily | Light-harvesting complex subunits | 8076355 | 3000199 | SCOP2B (2022-06-29) |
PA [auth n] | SCOP2B Superfamily | Light-harvesting complex subunits | 8076355 | 3000199 | SCOP2B (2022-06-29) |
PB [auth i] | SCOP2B Superfamily | Light-harvesting complex subunits | 8076355 | 3000199 | SCOP2B (2022-06-29) |
RB [auth k] | SCOP2B Superfamily | Light-harvesting complex subunits | 8076355 | 3000199 | SCOP2B (2022-06-29) |
T | SCOP2B Superfamily | Light-harvesting complex subunits | 8076355 | 3000199 | SCOP2B (2022-06-29) |
TA [auth s] | SCOP2B Superfamily | Light-harvesting complex subunits | 8076355 | 3000199 | SCOP2B (2022-06-29) |
TB [auth c] | SCOP2B Superfamily | Light-harvesting complex subunits | 8076355 | 3000199 | SCOP2B (2022-06-29) |
V | SCOP2B Superfamily | Light-harvesting complex subunits | 8076355 | 3000199 | SCOP2B (2022-06-29) |
VA [auth v] | SCOP2B Superfamily | Light-harvesting complex subunits | 8076355 | 3000199 | SCOP2B (2022-06-29) |
X | SCOP2B Superfamily | Light-harvesting complex subunits | 8076355 | 3000199 | SCOP2B (2022-06-29) |
XA [auth z] | SCOP2B Superfamily | Light-harvesting complex subunits | 8076355 | 3000199 | SCOP2B (2022-06-29) |
Z | SCOP2B Superfamily | Light-harvesting complex subunits | 8076355 | 3000199 | SCOP2B (2022-06-29) |
ZA [auth AB] | SCOP2B Superfamily | Light-harvesting complex subunits | 8076355 | 3000199 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth C] | CytoC_RC | e5b5mC1 | A: few secondary structure elements | X: Multiheme cytochromes | H: Photosynthetic reaction centre (cytochrome subunit) (From Topology) | T: Photosynthetic reaction centre (cytochrome subunit) | F: CytoC_RC | ECOD (1.6) |
KA [auth o] | CytoC_RC | e5b5mo1 | A: few secondary structure elements | X: Multiheme cytochromes | H: Photosynthetic reaction centre (cytochrome subunit) (From Topology) | T: Photosynthetic reaction centre (cytochrome subunit) | F: CytoC_RC | ECOD (1.6) |
B [auth L] | Photo_RC | e5b5mL1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: Photo_RC | ECOD (1.6) |
LA [auth x] | Photo_RC | e5b5mx1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: Photo_RC | ECOD (1.6) |
C [auth M] | Photo_RC | e5b5mM1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: Photo_RC | ECOD (1.6) |
MA [auth y] | Photo_RC | e5b5my1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: Photo_RC | ECOD (1.6) |
D [auth H] | PRCH_C | e5b5mH1 | A: beta barrels | X: SH3 | H: PRC-barrel domain (From Topology) | T: PRC-barrel domain | F: PRCH_C | ECOD (1.6) |
NA [auth t] | PRCH_C | e5b5mt1 | A: beta barrels | X: SH3 | H: PRC-barrel domain (From Topology) | T: PRC-barrel domain | F: PRCH_C | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth C], KA [auth o] | PF00556 | Antenna complex alpha/beta subunit (LHC) | Antenna complex alpha/beta subunit | - | Domain |
A [auth C], KA [auth o] | PF02276 | Photosynthetic reaction centre cytochrome C subunit (CytoC_RC) | Photosynthetic reaction centre cytochrome C subunit | - | Family |
B [auth L], LA [auth x] | PF00556 | Antenna complex alpha/beta subunit (LHC) | Antenna complex alpha/beta subunit | - | Domain |
B [auth L], LA [auth x] | PF00124 | Photosynthetic reaction centre protein (Photo_RC) | Photosynthetic reaction centre protein | - | Family |
C [auth M], MA [auth y] | PF00556 | Antenna complex alpha/beta subunit (LHC) | Antenna complex alpha/beta subunit | - | Domain |
C [auth M], MA [auth y] | PF00124 | Photosynthetic reaction centre protein (Photo_RC) | Photosynthetic reaction centre protein | - | Family |
D [auth H], NA [auth t] | PF00556 | Antenna complex alpha/beta subunit (LHC) | Antenna complex alpha/beta subunit | - | Domain |
D [auth H], NA [auth t] | PF03967 | Photosynthetic reaction centre, H-chain N-terminal region (PRCH) | Photosynthetic reaction centre, H-chain N-terminal region | - | Family |
D [auth H], NA [auth t] | PF05239 | PRC-barrel domain (PRC) | PRC-barrel domain | The PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, ... | Domain |
PF00556 | Antenna complex alpha/beta subunit (LHC) | Antenna complex alpha/beta subunit | - | Domain | |
PF02276 | Photosynthetic reaction centre cytochrome C subunit (CytoC_RC) | Photosynthetic reaction centre cytochrome C subunit | - | Family | |
PF00124 | Photosynthetic reaction centre protein (Photo_RC) | Photosynthetic reaction centre protein | - | Family | |
PF00556 | Antenna complex alpha/beta subunit (LHC) | Antenna complex alpha/beta subunit | - | Domain | |
PF03967 | Photosynthetic reaction centre, H-chain N-terminal region (PRCH) | Photosynthetic reaction centre, H-chain N-terminal region | - | Family | |
PF00124 | Photosynthetic reaction centre protein (Photo_RC) | Photosynthetic reaction centre protein | - | Family |