Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth C]SCOP2B SuperfamilyPRC cytochrome c repeat-like 8090735 3002452 SCOP2B (2022-06-29)
A [auth C]SCOP2B SuperfamilyPRC cytochrome c repeat-like 8073228 3002452 SCOP2B (2022-06-29)
KA [auth o]SCOP2B SuperfamilyPRC cytochrome c repeat-like 8090735 3002452 SCOP2B (2022-06-29)
KA [auth o]SCOP2B SuperfamilyPRC cytochrome c repeat-like 8073228 3002452 SCOP2B (2022-06-29)
D [auth H]SCOP2B SuperfamilyPRC-barrel domain 8097584 3000637 SCOP2B (2022-06-29)
D [auth H]SCOP2B SuperfamilyPhotosystem II reaction centre subunit H, transmembrane region 8100954 3000750 SCOP2B (2022-06-29)
NA [auth t]SCOP2B SuperfamilyPRC-barrel domain 8097584 3000637 SCOP2B (2022-06-29)
NA [auth t]SCOP2B SuperfamilyPhotosystem II reaction centre subunit H, transmembrane region 8100954 3000750 SCOP2B (2022-06-29)
HA [auth 8]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
JA [auth 0]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
JB [auth AL]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
RSCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
RA [auth q]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
BA [auth 2]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
BB [auth AD]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
DA [auth 4]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
DB [auth AF]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
F [auth B]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
FA [auth 6]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
FB [auth AH]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
H [auth E]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
HB [auth AJ]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
J [auth G]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
L [auth J]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
LB [auth e]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
NB [auth g]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
PA [auth n]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
PB [auth i]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
RB [auth k]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
TSCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
TA [auth s]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
TB [auth c]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
VSCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
VA [auth v]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
XSCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
XA [auth z]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
ZSCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)
ZA [auth AB]SCOP2B SuperfamilyLight-harvesting complex subunits 8076355 3000199 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth C]CytoC_RCe5b5mC1 A: few secondary structure elementsX: Multiheme cytochromesH: Photosynthetic reaction centre (cytochrome subunit) (From Topology)T: Photosynthetic reaction centre (cytochrome subunit)F: CytoC_RCECOD (1.6)
KA [auth o]CytoC_RCe5b5mo1 A: few secondary structure elementsX: Multiheme cytochromesH: Photosynthetic reaction centre (cytochrome subunit) (From Topology)T: Photosynthetic reaction centre (cytochrome subunit)F: CytoC_RCECOD (1.6)
B [auth L]Photo_RCe5b5mL1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: Photo_RCECOD (1.6)
LA [auth x]Photo_RCe5b5mx1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: Photo_RCECOD (1.6)
C [auth M]Photo_RCe5b5mM1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: Photo_RCECOD (1.6)
MA [auth y]Photo_RCe5b5my1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: Photo_RCECOD (1.6)
D [auth H]PRCH_Ce5b5mH1 A: beta barrelsX: SH3H: PRC-barrel domain (From Topology)T: PRC-barrel domainF: PRCH_CECOD (1.6)
NA [auth t]PRCH_Ce5b5mt1 A: beta barrelsX: SH3H: PRC-barrel domain (From Topology)T: PRC-barrel domainF: PRCH_CECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth C],
KA [auth o]
PF00556Antenna complex alpha/beta subunit (LHC)Antenna complex alpha/beta subunit- Domain
A [auth C],
KA [auth o]
PF02276Photosynthetic reaction centre cytochrome C subunit (CytoC_RC)Photosynthetic reaction centre cytochrome C subunit- Family
B [auth L],
LA [auth x]
PF00556Antenna complex alpha/beta subunit (LHC)Antenna complex alpha/beta subunit- Domain
B [auth L],
LA [auth x]
PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
C [auth M],
MA [auth y]
PF00556Antenna complex alpha/beta subunit (LHC)Antenna complex alpha/beta subunit- Domain
C [auth M],
MA [auth y]
PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
D [auth H],
NA [auth t]
PF00556Antenna complex alpha/beta subunit (LHC)Antenna complex alpha/beta subunit- Domain
D [auth H],
NA [auth t]
PF03967Photosynthetic reaction centre, H-chain N-terminal region (PRCH)Photosynthetic reaction centre, H-chain N-terminal region- Family
D [auth H],
NA [auth t]
PF05239PRC-barrel domain (PRC)PRC-barrel domainThe PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, ...The PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, archaea and plants. This domain is also present at the carboxyl terminus of the pan-bacterial protein RimM, which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain [1].
Domain
PF00556Antenna complex alpha/beta subunit (LHC)Antenna complex alpha/beta subunit- Domain
PF02276Photosynthetic reaction centre cytochrome C subunit (CytoC_RC)Photosynthetic reaction centre cytochrome C subunit- Family
PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
PF00556Antenna complex alpha/beta subunit (LHC)Antenna complex alpha/beta subunit- Domain
PF03967Photosynthetic reaction centre, H-chain N-terminal region (PRCH)Photosynthetic reaction centre, H-chain N-terminal region- Family
PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth C],
KA [auth o]
Photosynthetic reaction center cytochrome c subunit
B [auth L],
LA [auth x]
Photosynthetic reaction center L subunit
C [auth M],
MA [auth y]
Photosynthetic reaction center M subunit
D [auth H],
NA [auth t]
Photosynthetic reaction center H subunit
LH1 alpha polypeptide
LH1 beta polypeptide

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth C],
KA [auth o]
IPR036280Multiheme cytochrome superfamilyHomologous Superfamily
A [auth C],
KA [auth o]
IPR023119Multihaem cytochrome, PRC subunit superfamilyHomologous Superfamily
A [auth C],
KA [auth o]
IPR003158Photosynthetic reaction centre, cytochrome c subunitFamily
B [auth L],
LA [auth x]
IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
B [auth L],
LA [auth x]
IPR000484Photosynthetic reaction centre, L/MFamily
B [auth L],
LA [auth x]
IPR005871Photosynthetic reaction centre, L subunitFamily
C [auth M],
MA [auth y]
IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
C [auth M],
MA [auth y]
IPR005781Photosynthetic reaction centre, M subunitFamily
C [auth M],
MA [auth y]
IPR000484Photosynthetic reaction centre, L/MFamily
D [auth H],
NA [auth t]
IPR014747Bacterial photosynthetic reaction centre, H-chain, C-terminalHomologous Superfamily
D [auth H],
NA [auth t]
IPR015810Photosynthetic reaction centre, H subunit, N-terminalDomain
D [auth H],
NA [auth t]
IPR005652Photosynthetic reaction centre, H subunitFamily
D [auth H],
NA [auth t]
IPR037097Photosynthetic reaction centre, H subunit, N-terminal domain superfamilyHomologous Superfamily
D [auth H],
NA [auth t]
IPR011033PRC-barrel-like superfamilyHomologous Superfamily
D [auth H],
NA [auth t]
IPR027275PRC-barrel domainDomain
IPR000066Antenna complex, alpha/beta subunitDomain
IPR018332Antenna complex, alpha subunitFamily
IPR002361Antenna complex, alpha subunit conserved siteConserved Site
IPR035889Light-harvesting complexHomologous Superfamily
IPR000066Antenna complex, alpha/beta subunitDomain
IPR023624Antenna complex, beta domain superfamilyHomologous Superfamily
IPR035889Light-harvesting complexHomologous Superfamily
IPR002362Light-harvesting protein B beta chainFamily