5GUP
Cryo-EM structure of mammalian respiratory supercomplex I1III2IV1
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
J | SCOP2 Family | Mitochondrial NADH dehydrogenase iron-sulfur protein 4 | 8053971 | 4005098 | SCOP2 (2022-06-29) |
J | SCOP2 Superfamily | NADH-ubiquinone oxidoreductase-like | 8053975 | 3002258 | SCOP2 (2022-06-29) |
P | SCOP2 Family | Mitochondrial ribosomal protein L51/S25/CI-B8 domain | 8065218 | 4002951 | SCOP2 (2022-06-29) |
P | SCOP2 Superfamily | Thioredoxin-like | 8065219 | 3000031 | SCOP2 (2022-06-29) |
C | SCOP2B Superfamily | HydB/Nqo4-like | 8085733 | 3001849 | SCOP2B (2022-06-29) |
JA [auth j] | SCOP2B Superfamily | NADH-quinone oxidoreductase subunit 11-like | 8106932 | 3002200 | SCOP2B (2022-06-29) |
KA [auth k] | SCOP2 Family | NADH-quinone oxidoreductase NDH subunit 11-like | 8098765 | 4005793 | SCOP2 (2022-06-29) |
KA [auth k] | SCOP2 Superfamily | NADH-quinone oxidoreductase subunit 11-like | 8098766 | 3002200 | SCOP2 (2022-06-29) |
RA [auth r] | SCOP2 Family | NADH-quinone oxidoreductase subunit 8-like | 8047486 | 4005664 | SCOP2 (2022-06-29) |
RA [auth r] | SCOP2 Superfamily | Antiporter subunits half-channel-like | 8054145 | 3002280 | SCOP2 (2022-06-29) |
E | SCOP2 Family | NQO2-like | 8085746 | 4002945 | SCOP2 (2022-06-29) |
E | SCOP2 Superfamily | Thioredoxin-like | 8085747 | 3000031 | SCOP2 (2022-06-29) |
KB [auth Aa] | SCOP2 Family | Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | 8097739 | 4002057 | SCOP2 (2022-06-29) |
KB [auth Aa] | SCOP2 Superfamily | Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | 8097740 | 3000770 | SCOP2 (2022-06-29) |
AB [auth 0] | SCOP2 Family | Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | 8068572 | 4002082 | SCOP2 (2022-06-29) |
AB [auth 0] | SCOP2 Superfamily | Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | 8068573 | 3000806 | SCOP2 (2022-06-29) |
LB [auth Ab] | SCOP2B Superfamily | Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | 8068573 | 3000806 | SCOP2B (2022-06-29) |
BB [auth 1] | SCOP2 Family | Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | 8068582 | 4002059 | SCOP2 (2022-06-29) |
BB [auth 1] | SCOP2 Superfamily | Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | 8068583 | 3000779 | SCOP2 (2022-06-29) |
MB [auth Ac] | SCOP2B Superfamily | Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | 8068583 | 3000779 | SCOP2B (2022-06-29) |
DB [auth 3] | SCOP2 Family | Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | 8073348 | 4002065 | SCOP2 (2022-06-29) |
DB [auth 3] | SCOP2 Superfamily | Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | 8073349 | 3000787 | SCOP2 (2022-06-29) |
NB [auth Ad] | SCOP2B Superfamily | Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | 8073349 | 3000787 | SCOP2B (2022-06-29) |
F | SCOP2 Family | Respiratory complex I NDUFS6 accessory subunit-like | 8078979 | 4007506 | SCOP2 (2022-06-29) |
F | SCOP2 Superfamily | Rubredoxin-like | 8091048 | 3001257 | SCOP2 (2022-06-29) |
YB [auth Ao] | SCOP2 Family | Cytochrome c oxidase subunit E | 8097743 | 4001366 | SCOP2 (2022-06-29) |
YB [auth Ao] | SCOP2 Superfamily | Cytochrome c oxidase subunit E | 8097744 | 3001402 | SCOP2 (2022-06-29) |
I | SCOP2 Family | Nq06/HydA N-terminal domain-like | 8085726 | 4007641 | SCOP2 (2022-06-29) |
I | SCOP2 Superfamily | Nqo6/HydA N-terminal domain-like | 8085727 | 3002291 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF02937 | e5gupA1 | A: extended segments | X: Mitochondrial cytochrome c oxidase subunit VIc (From Topology) | H: Mitochondrial cytochrome c oxidase subunit VIc (From Topology) | T: Mitochondrial cytochrome c oxidase subunit VIc | F: PF02937 | ECOD (1.6) |
J | PF04800 | e5gupJ1 | A: a+b two layers | X: Putative oxidoreductase (From Topology) | H: Putative oxidoreductase (From Topology) | T: Putative oxidoreductase | F: PF04800 | ECOD (1.6) |
K | PF05071 | e5gupK1 | A: a+b three layers | X: Mitochondrial complex I, B17.2 subunit (From Topology) | H: Mitochondrial complex I, B17.2 subunit (From Topology) | T: Mitochondrial complex I, B17.2 subunit | F: PF05071 | ECOD (1.6) |
L | PF01370 | e5gupL1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: NAD(P)-binding Rossmann-fold domains | F: PF01370 | ECOD (1.6) |
N | PF04716 | e5gupN1 | A: extended segments | X: FATC domain (From Topology) | H: FATC domain (From Topology) | T: FATC domain | F: PF04716 | ECOD (1.6) |
O | PF00550 | e5gupO1 | A: alpha bundles | X: ACP-like | H: Acyl-carrier protein (ACP) (From Topology) | T: Acyl-carrier protein (ACP) | F: PF00550 | ECOD (1.6) |
X | PF00550 | e5gupX1 | A: alpha bundles | X: ACP-like | H: Acyl-carrier protein (ACP) (From Topology) | T: Acyl-carrier protein (ACP) | F: PF00550 | ECOD (1.6) |
P | PF05047 | e5gupP1 | A: a+b three layers | X: Thioredoxin-like | H: Thioredoxin-like (From Topology) | T: Thioredoxin-like | F: PF05047 | ECOD (1.6) |
Q | PF05347 | e5gupQ1 | A: alpha bundles | X: LYR protein (From Topology) | H: LYR protein (From Topology) | T: LYR protein | F: PF05347 | ECOD (1.6) |
S | PF15879 | e5gupS1 | A: extended segments | X: Mitochondrial complex I, MWFE subunit (From Topology) | H: Mitochondrial complex I, MWFE subunit (From Topology) | T: Mitochondrial complex I, MWFE subunit | F: PF15879 | ECOD (1.6) |
T | PF14987 | e5gupT1 | A: extended segments | X: Mitochondrial complex I, B9 subunit (From Topology) | H: Mitochondrial complex I, B9 subunit (From Topology) | T: Mitochondrial complex I, B9 subunit | F: PF14987 | ECOD (1.6) |
B | PF10589 | e5gupB2 | A: alpha bundles | X: Bromodomain-like | H: Nqo1C-terminal domain-like (From Topology) | T: Nqo1C-terminal domain-like | F: PF10589 | ECOD (1.6) |
B | PF22461 | e5gupB3 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Nqo1 middle domain-like | F: PF22461 | ECOD (1.6) |
B | PF01512 | e5gupB1 | A: a/b three-layered sandwiches | X: Nqo1 FMN-binding domain-like (From Topology) | H: Nqo1 FMN-binding domain-like (From Topology) | T: Nqo1 FMN-binding domain-like | F: PF01512 | ECOD (1.6) |
U | PF01712 | e5gupU1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF01712 | ECOD (1.6) |
W | PF06212 | e5gupW1 | A: extended segments | X: Mitochondrial complex I, B16.6 subunit (From Topology) | H: Mitochondrial complex I, B16.6 subunit (From Topology) | T: Mitochondrial complex I, B16.6 subunit | F: PF06212 | ECOD (1.6) |
Y | PF14813 | e5gupY1 | A: extended segments | X: Mitochondrial complex I, AGGG subunit (From Topology) | H: Mitochondrial complex I, AGGG subunit (From Topology) | T: Mitochondrial complex I, AGGG subunit | F: PF14813 | ECOD (1.6) |
AA [auth a] | PF09781 | e5gupa1 | A: extended segments | X: Mitochondrial complex I, SGDH subunit (From Topology) | H: Mitochondrial complex I, SGDH subunit (From Topology) | T: Mitochondrial complex I, SGDH subunit | F: PF09781 | ECOD (1.6) |
DA [auth d] | PF10249 | e5gupd1 | A: alpha bundles | X: Mitochondrial complex I, PDSW subunit (From Topology) | H: Mitochondrial complex I, PDSW subunit (From Topology) | T: Mitochondrial complex I, PDSW subunit | F: PF10249 | ECOD (1.6) |
FA [auth f] | PF15088 | e5gupf1 | A: extended segments | X: Mitochondrial complex I, KFYI subunit (From Topology) | H: Mitochondrial complex I, KFYI subunit (From Topology) | T: Mitochondrial complex I, KFYI subunit | F: PF15088 | ECOD (1.6) |
GA [auth g] | PF06374 | e5gupg1 | A: extended segments | X: Mitochondrial complex I, B14.5b subunit (From Topology) | H: Mitochondrial complex I, B14.5b subunit (From Topology) | T: Mitochondrial complex I, B14.5b subunit | F: PF06374 | ECOD (1.6) |
HA [auth h] | PF10200 | e5guph1 | A: alpha bundles | X: cytochrome bc1 complex 11 kDa protein-like | H: CHCH domain (From Topology) | T: CHCH domain | F: PF10200 | ECOD (1.6) |
IA [auth i] | PF00361,PF06444 | e5gupi1 | A: alpha complex topology | X: Sodium/proton antiporter subunits-like (From Homology) | H: Sodium/proton antiporter subunits-like | T: NADH-quinone oxidoreductase subunit L (NuoL)-related | F: PF00361,PF06444 | ECOD (1.6) |
JA [auth j] | PF00507 | e5gupj1 | A: extended segments | X: NADH-quinone oxidoreductase subunit A (From Topology) | H: NADH-quinone oxidoreductase subunit A (From Topology) | T: NADH-quinone oxidoreductase subunit A | F: PF00507 | ECOD (1.6) |
KA [auth k] | PF00420 | e5gupk1 | A: alpha complex topology | X: NADH-quinone oxidoreductase subunit K (From Topology) | H: NADH-quinone oxidoreductase subunit K (From Topology) | T: NADH-quinone oxidoreductase subunit K | F: PF00420 | ECOD (1.6) |
LA [auth l] | PF00361,PF00662,PF06455 | e5gupl1 | A: alpha complex topology | X: Sodium/proton antiporter subunits-like (From Homology) | H: Sodium/proton antiporter subunits-like | T: NADH-quinone oxidoreductase subunit L (NuoL)-related | F: PF00361,PF00662,PF06455 | ECOD (1.6) |
MA [auth m] | PF00499 | e5gupm1 | A: extended segments | X: NADH-quinone oxidoreductase subunit J (From Topology) | H: NADH-quinone oxidoreductase subunit J (From Topology) | T: NADH-quinone oxidoreductase subunit J | F: PF00499 | ECOD (1.6) |
NA [auth n] | PF08040 | e5gupn1 | A: extended segments | X: Mitochondrial complex I, MNLL subunit (From Topology) | H: Mitochondrial complex I, MNLL subunit (From Topology) | T: Mitochondrial complex I, MNLL subunit | F: PF08040 | ECOD (1.6) |
D | PF00329 | e5gupD1 | A: a+b two layers | X: Nqo5-like | H: Nqo5-like (From Topology) | T: Nqo5-like | F: PF00329 | ECOD (1.6) |
PA [auth p] | PF05347 | e5gupp1 | A: alpha bundles | X: LYR protein (From Topology) | H: LYR protein (From Topology) | T: LYR protein | F: PF05347 | ECOD (1.6) |
QA [auth q] | PF00361,PF01059 | e5gupq1 | A: alpha complex topology | X: Sodium/proton antiporter subunits-like (From Homology) | H: Sodium/proton antiporter subunits-like | T: NADH-quinone oxidoreductase subunit L (NuoL)-related | F: PF00361,PF01059 | ECOD (1.6) |
RA [auth r] | PF00146 | e5gupr1 | A: alpha complex topology | X: Sodium/proton antiporter subunits-like (From Homology) | H: Sodium/proton antiporter subunits-like | T: NADH-quinone oxidoreductase subunit 8 (Nqo8)-related | F: PF00146 | ECOD (1.6) |
SA [auth s] | PF06747 | e5gups1 | A: few secondary structure elements | X: p8-MTCP1-related (From Topology) | H: p8-MTCP1-related (From Topology) | T: p8-MTCP1-related | F: PF06747 | ECOD (1.6) |
FB [auth 5] | PF00675,PF05193 | e5gup51 | A: a+b two layers | X: LuxS, MPP, ThrRS/AlaRS common domain | H: LuxS, MPP, ThrRS/AlaRS common domain | T: LuxS/MPP-like metallohydrolase | F: PF00675,PF05193 | ECOD (1.6) |
FB [auth 5] | PF05193 | e5gup52 | A: a+b two layers | X: LuxS, MPP, ThrRS/AlaRS common domain | H: LuxS, MPP, ThrRS/AlaRS common domain | T: LuxS/MPP-like metallohydrolase | F: PF05193 | ECOD (1.6) |
UA [auth u] | PF00675,PF05193 | e5gupu1 | A: a+b two layers | X: LuxS, MPP, ThrRS/AlaRS common domain | H: LuxS, MPP, ThrRS/AlaRS common domain | T: LuxS/MPP-like metallohydrolase | F: PF00675,PF05193 | ECOD (1.6) |
UA [auth u] | PF05193 | e5gupu2 | A: a+b two layers | X: LuxS, MPP, ThrRS/AlaRS common domain | H: LuxS, MPP, ThrRS/AlaRS common domain | T: LuxS/MPP-like metallohydrolase | F: PF05193 | ECOD (1.6) |
GB [auth 6] | PF00675 | e5gup62 | A: a+b two layers | X: LuxS, MPP, ThrRS/AlaRS common domain | H: LuxS, MPP, ThrRS/AlaRS common domain | T: LuxS/MPP-like metallohydrolase | F: PF00675 | ECOD (1.6) |
GB [auth 6] | PF05193 | e5gup61 | A: a+b two layers | X: LuxS, MPP, ThrRS/AlaRS common domain | H: LuxS, MPP, ThrRS/AlaRS common domain | T: LuxS/MPP-like metallohydrolase | F: PF05193 | ECOD (1.6) |
VA [auth v] | PF00675 | e5gupv1 | A: a+b two layers | X: LuxS, MPP, ThrRS/AlaRS common domain | H: LuxS, MPP, ThrRS/AlaRS common domain | T: LuxS/MPP-like metallohydrolase | F: PF00675 | ECOD (1.6) |
VA [auth v] | PF05193 | e5gupv2 | A: a+b two layers | X: LuxS, MPP, ThrRS/AlaRS common domain | H: LuxS, MPP, ThrRS/AlaRS common domain | T: LuxS/MPP-like metallohydrolase | F: PF05193 | ECOD (1.6) |
WA [auth w] | PF00032 | e5gupw2 | A: alpha bundles | X: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology) | H: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology) | T: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | F: PF00032 | ECOD (1.6) |
WA [auth w] | PF00033 | e5gupw1 | A: alpha bundles | X: Transmembrane heme-binding four-helical bundle (From Homology) | H: Transmembrane heme-binding four-helical bundle | T: Transmembrane di-heme cytochromes | F: PF00033 | ECOD (1.6) |
HB [auth 7] | PF00032 | e5gup71 | A: alpha bundles | X: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology) | H: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology) | T: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | F: PF00032 | ECOD (1.6) |
HB [auth 7] | PF00033 | e5gup72 | A: alpha bundles | X: Transmembrane heme-binding four-helical bundle (From Homology) | H: Transmembrane heme-binding four-helical bundle | T: Transmembrane di-heme cytochromes | F: PF00033 | ECOD (1.6) |
IB [auth 8] | PF02167 | e5gup82 | A: alpha arrays | X: Cytochrome c-like | H: Cytochrome c (From Topology) | T: Cytochrome c | F: PF02167 | ECOD (1.6) |
IB [auth 8] | PF02167 | e5gup81 | A: extended segments | X: cytochrome c1 transmembrane anchor (From Topology) | H: cytochrome c1 transmembrane anchor (From Topology) | T: cytochrome c1 transmembrane anchor | F: PF02167 | ECOD (1.6) |
XA [auth x] | PF02167 | e5gupx2 | A: alpha arrays | X: Cytochrome c-like | H: Cytochrome c (From Topology) | T: Cytochrome c | F: PF02167 | ECOD (1.6) |
XA [auth x] | PF02167 | e5gupx1 | A: extended segments | X: cytochrome c1 transmembrane anchor (From Topology) | H: cytochrome c1 transmembrane anchor (From Topology) | T: cytochrome c1 transmembrane anchor | F: PF02167 | ECOD (1.6) |
JB [auth 9] | PF02271 | e5gup91 | A: alpha arrays | X: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology) | H: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology) | T: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | F: PF02271 | ECOD (1.6) |
YA [auth y] | PF02271 | e5gupy1 | A: alpha arrays | X: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology) | H: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology) | T: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | F: PF02271 | ECOD (1.6) |
E | PF01257 | e5gupE1 | A: a+b three layers | X: Thioredoxin-like | H: Thioredoxin-like (From Topology) | T: Thioredoxin-like | F: PF01257 | ECOD (1.6) |
KB [auth Aa] | PF02939 | e5gupAa1 | A: extended segments | X: Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology) | H: Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology) | T: Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | F: PF02939 | ECOD (1.6) |
ZA [auth z] | PF02939 | e5gupz1 | A: extended segments | X: Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology) | H: Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology) | T: Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | F: PF02939 | ECOD (1.6) |
AB [auth 0] | PF02320 | e5gup01 | A: alpha bundles | X: cytochrome bc1 complex 11 kDa protein-like | H: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology) | T: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | F: PF02320 | ECOD (1.6) |
LB [auth Ab] | PF02320 | e5gupAb1 | A: alpha bundles | X: cytochrome bc1 complex 11 kDa protein-like | H: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology) | T: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | F: PF02320 | ECOD (1.6) |
BB [auth 1] | PF05365 | e5gup11 | A: extended segments | X: Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology) | H: Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology) | T: Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | F: PF05365 | ECOD (1.6) |
MB [auth Ac] | PF05365 | e5gupAc1 | A: extended segments | X: Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology) | H: Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology) | T: Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | F: PF05365 | ECOD (1.6) |
CB [auth 2] | PF00355 | e5gup22 | A: beta sandwiches | X: ISP domain (From Topology) | H: ISP domain (From Topology) | T: ISP domain | F: PF00355 | ECOD (1.6) |
CB [auth 2] | PF02921 | e5gup21 | A: extended segments | X: iron-sulfur subunit (ISP) transmembrane anchor (From Topology) | H: iron-sulfur subunit (ISP) transmembrane anchor (From Topology) | T: iron-sulfur subunit (ISP) transmembrane anchor | F: PF02921 | ECOD (1.6) |
EB [auth 4] | PF00355 | e5gup42 | A: beta sandwiches | X: ISP domain (From Topology) | H: ISP domain (From Topology) | T: ISP domain | F: PF00355 | ECOD (1.6) |
EB [auth 4] | PF02921 | e5gup41 | A: extended segments | X: iron-sulfur subunit (ISP) transmembrane anchor (From Topology) | H: iron-sulfur subunit (ISP) transmembrane anchor (From Topology) | T: iron-sulfur subunit (ISP) transmembrane anchor | F: PF02921 | ECOD (1.6) |
DB [auth 3] | PF08997 | e5gup31 | A: extended segments | X: Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology) | H: Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology) | T: Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | F: PF08997 | ECOD (1.6) |
NB [auth Ad] | PF08997 | e5gupAd1 | A: extended segments | X: Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology) | H: Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology) | T: Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | F: PF08997 | ECOD (1.6) |
PB [auth Af] | PF09165 | e5gupAf1 | A: extended segments | X: Ubiquinol-cytochrome c reductase 8 kDa protein (From Topology) | H: Ubiquinol-cytochrome c reductase 8 kDa protein (From Topology) | T: Ubiquinol-cytochrome c reductase 8 kDa protein | F: PF09165 | ECOD (1.6) |
OB [auth Ae] | PF09165 | e5gupAe1 | A: extended segments | X: Ubiquinol-cytochrome c reductase 8 kDa protein (From Topology) | H: Ubiquinol-cytochrome c reductase 8 kDa protein (From Topology) | T: Ubiquinol-cytochrome c reductase 8 kDa protein | F: PF09165 | ECOD (1.6) |
QB [auth Ag] | PF02285 | e5gupAg1 | A: extended segments | X: Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) (From Topology) | H: Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) (From Topology) | T: Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) | F: PF02285 | ECOD (1.6) |
RB [auth Ah] | PF02238 | e5gupAh1 | A: extended segments | X: Mitochondrial cytochrome c oxidase subunit VIIa (From Topology) | H: Mitochondrial cytochrome c oxidase subunit VIIa (From Topology) | T: Mitochondrial cytochrome c oxidase subunit VIIa | F: PF02238 | ECOD (1.6) |
SB [auth Ai] | PF05392 | e5gupAi1 | A: extended segments | X: Mitochondrial cytochrome c oxidase subunit VIIb (From Topology) | H: Mitochondrial cytochrome c oxidase subunit VIIb (From Topology) | T: Mitochondrial cytochrome c oxidase subunit VIIb | F: PF05392 | ECOD (1.6) |
TB [auth Aj] | PF02935 | e5gupAj1 | A: extended segments | X: Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) (From Topology) | H: Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) (From Topology) | T: Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) | F: PF02935 | ECOD (1.6) |
F | PF10276 | e5gupF1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Cytochrome c oxidase Subunit F | F: PF10276 | ECOD (1.6) |
UB [auth Ak] | PF00115 | e5gupAk1 | A: alpha superhelices | X: Cytochrome c oxidase subunit I-like | H: Cytochrome c oxidase subunit I-like (From Topology) | T: Cytochrome c oxidase subunit I-like | F: PF00115 | ECOD (1.6) |
VB [auth Al] | PF00116 | e5gupAl1 | A: beta sandwiches | X: Cupredoxin-like | H: Cupredoxin-related (From Topology) | T: Cupredoxin-related | F: PF00116 | ECOD (1.6) |
VB [auth Al] | PF02790 | e5gupAl2 | A: extended segments | X: Cytochrome c oxidase subunit II-like, transmembrane region (From Topology) | H: Cytochrome c oxidase subunit II-like, transmembrane region (From Topology) | T: Cytochrome c oxidase subunit II-like, transmembrane region | F: PF02790 | ECOD (1.6) |
WB [auth Am] | PF00510 | e5gupAm1 | A: alpha bundles | X: Cytochrome c oxidase subunit III-like (From Topology) | H: Cytochrome c oxidase subunit III-like (From Topology) | T: Cytochrome c oxidase subunit III-like | F: PF00510 | ECOD (1.6) |
XB [auth An] | PF02936 | e5gupAn1 | A: extended segments | X: Mitochondrial cytochrome c oxidase subunit IV (From Topology) | H: Mitochondrial cytochrome c oxidase subunit IV (From Topology) | T: Mitochondrial cytochrome c oxidase subunit IV | F: PF02936 | ECOD (1.6) |
YB [auth Ao] | PF02284 | e5gupAo1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Cytochrome c oxidase subunit E (From Topology) | T: Cytochrome c oxidase subunit E | F: PF02284 | ECOD (1.6) |
ZB [auth Ap] | PF01215 | e5gupAp1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Cytochrome c oxidase Subunit F | F: PF01215 | ECOD (1.6) |
AC [auth Aq] | PF02046 | e5gupAq1 | A: extended segments | X: Mitochondrial cytochrome c oxidase subunit VIa (From Topology) | H: Mitochondrial cytochrome c oxidase subunit VIa (From Topology) | T: Mitochondrial cytochrome c oxidase subunit VIa | F: PF02046 | ECOD (1.6) |
BC [auth Ar] | PF02297 | e5gupAr1 | A: few secondary structure elements | X: Cytochrome c oxidase subunit h (From Topology) | H: Cytochrome c oxidase subunit h (From Topology) | T: Cytochrome c oxidase subunit h | F: PF02297 | ECOD (1.6) |
G | PF22117 | e5gupG6 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: PF22117 | ECOD (1.6) |
G | PF13510 | e5gupG3 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF13510 | ECOD (1.6) |
G | PF22151 | e5gupG1 | A: a+b two layers | X: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology) | H: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domain 1 | F: PF22151 | ECOD (1.6) |
G | PF00384 | e5gupG2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Formate dehydrogenase/DMSO reductase, domains 2 and 3 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domains 2 and 3 | F: PF00384 | ECOD (1.6) |
G | PF00384,PF09326 | e5gupG4 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Formate dehydrogenase/DMSO reductase, domains 2 and 3 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domains 2 and 3 | F: PF00384,PF09326 | ECOD (1.6) |
G | PF10588 | e5gupG5 | A: extended segments | X: iron-sulfur center-binding helical hairpin (From Topology) | H: iron-sulfur center-binding helical hairpin (From Topology) | T: iron-sulfur center-binding helical hairpin | F: PF10588 | ECOD (1.6) |
H | PF00037 | e5gupH1 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: PF00037 | ECOD (1.6) |
I | PF01058 | e5gupI1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: CheY-like | F: PF01058 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00507 | NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 (Oxidored_q4) | NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 | - | Family | |
PF04800 | NADH dehydrogenase ubiquinone Fe-S protein 4 (NDUS4) | NADH dehydrogenase ubiquinone Fe-S protein 4 | - | Family | |
PF00420 | NADH-ubiquinone/plastoquinone oxidoreductase chain 4L (Oxidored_q2) | NADH-ubiquinone/plastoquinone oxidoreductase chain 4L | - | Family | |
PF05071 | NADH ubiquinone oxidoreductase subunit NDUFA12 (NDUFA12) | NADH ubiquinone oxidoreductase subunit NDUFA12 | - | Family | |
PF00146 | NADH dehydrogenase (NADHdh) | NADH dehydrogenase | - | Family | |
PF01370 | NAD dependent epimerase/dehydratase family (Epimerase) | NAD dependent epimerase/dehydratase family | - | Family | |
PF00361 | Proton-conducting membrane transporter (Proton_antipo_M) | Proton-conducting membrane transporter | - | Family | |
PF00662 | NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus (Proton_antipo_N) | NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus | - | Family | |
PF00499 | NADH-ubiquinone/plastoquinone oxidoreductase chain 6 (Oxidored_q3) | NADH-ubiquinone/plastoquinone oxidoreductase chain 6 | - | Family | |
PF05347 | Complex 1 protein (LYR family) (Complex1_LYR) | Complex 1 protein (LYR family) | - | Family | |
PF05047 | Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain (L51_S25_CI-B8) | Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain | The proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all member ... | Domain | |
PF00361 | Proton-conducting membrane transporter (Proton_antipo_M) | Proton-conducting membrane transporter | - | Family | |
PF01059 | NADH-ubiquinone oxidoreductase chain 4, amino terminus (Oxidored_q5_N) | NADH-ubiquinone oxidoreductase chain 4, amino terminus | - | Family | |
PF15879 | NADH-ubiquinone oxidoreductase MWFE subunit (MWFE) | NADH-ubiquinone oxidoreductase MWFE subunit | - | Family | |
PF14987 | NADH dehydrogenase 1 alpha subcomplex subunit 3 (NADHdh_A3) | NADH dehydrogenase 1 alpha subcomplex subunit 3 | - | Family | |
PF01512 | Respiratory-chain NADH dehydrogenase 51 Kd subunit (Complex1_51K) | Respiratory-chain NADH dehydrogenase 51 Kd subunit | - | Family | |
PF10589 | NADH-ubiquinone oxidoreductase-F iron-sulfur binding region (NADH_4Fe-4S) | NADH-ubiquinone oxidoreductase-F iron-sulfur binding region | - | Domain | |
PF01712 | Deoxynucleoside kinase (dNK) | Deoxynucleoside kinase | This family consists of various deoxynucleoside kinases cytidine EC:2.7.1.74, guanosine EC:2.7.1.113, adenosine EC:2.7.1.76 and thymidine kinase EC:2.7.1.21 (which also phosphorylates deoxyuridine and deoxycytosine.) These enzymes catalyse the prod ... | Domain | |
PF05193 | Peptidase M16 inactive domain (Peptidase_M16_C) | Peptidase M16 inactive domain | Peptidase M16 consists of two structurally related domains. One is the active peptidase, whereas the other is inactive. The two domains hold the substrate like a clamp [1]. | Domain | |
PF00675 | Insulinase (Peptidase family M16) (Peptidase_M16) | Insulinase (Peptidase family M16) | - | Family | |
PF02466 | Tim17/Tim22/Tim23/Pmp24 family (Tim17) | Tim17/Tim22/Tim23/Pmp24 family | - | Family | |
PF00033 | Cytochrome b/b6/petB (Cytochrome_B) | Cytochrome b/b6/petB | - | Domain | |
PF02939 | UcrQ family (UcrQ) | UcrQ family | - | Family | |
PF08122 | NADH-ubiquinone oxidoreductase B12 subunit family (NDUF_B12) | NADH-ubiquinone oxidoreductase B12 subunit family | - | Family | |
PF00346 | Respiratory-chain NADH dehydrogenase, 49 Kd subunit (Complex1_49kDa) | Respiratory-chain NADH dehydrogenase, 49 Kd subunit | - | Family | |
PF10249 | NADH-ubiquinone oxidoreductase subunit 10 (NDUFB10) | NADH-ubiquinone oxidoreductase subunit 10 | - | Family | |
FB [auth 5], UA [auth u] | PF05193 | Peptidase M16 inactive domain (Peptidase_M16_C) | Peptidase M16 inactive domain | Peptidase M16 consists of two structurally related domains. One is the active peptidase, whereas the other is inactive. The two domains hold the substrate like a clamp [1]. | Domain |
FB [auth 5], UA [auth u] | PF00675 | Insulinase (Peptidase family M16) (Peptidase_M16) | Insulinase (Peptidase family M16) | - | Family |
HB [auth 7], WA [auth w] | PF00032 | Cytochrome b(C-terminal)/b6/petD (Cytochrom_B_C) | Cytochrome b(C-terminal)/b6/petD | - | Domain |
HB [auth 7], WA [auth w] | PF00033 | Cytochrome b/b6/petB (Cytochrome_B) | Cytochrome b/b6/petB | - | Domain |
PF01257 | Thioredoxin-like [2Fe-2S] ferredoxin (2Fe-2S_thioredx) | Thioredoxin-like [2Fe-2S] ferredoxin | - | Family | |
AB [auth 0], LB [auth Ab] | PF02320 | Ubiquinol-cytochrome C reductase hinge protein (UCR_hinge) | Ubiquinol-cytochrome C reductase hinge protein | - | Family |
BB [auth 1], MB [auth Ac] | PF05365 | Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like (UCR_UQCRX_QCR9) | Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like | - | Family |
CB [auth 2], EB [auth 4] | PF02921 | Ubiquinol cytochrome reductase transmembrane region (UCR_TM) | Ubiquinol cytochrome reductase transmembrane region | - | Family |
CB [auth 2], EB [auth 4] | PF00355 | Rieske [2Fe-2S] domain (Rieske) | Rieske [2Fe-2S] domain | The rieske domain has a [2Fe-2S] centre. Two conserved cysteines coordinate one Fe ion, while the other Fe ion is coordinated by two conserved histidines. In hyperthermophilic archaea there is a SKTPCX(2-3)C motif at the C-terminus. The cysteines in ... | Domain |
PF10276 | Zinc-finger domain (zf-CHCC) | Zinc-finger domain | This is a short zinc-finger domain conserved from fungi to humans. It is Cx8Hx14Cx2C. | Domain | |
PF00384 | Molybdopterin oxidoreductase (Molybdopterin) | Molybdopterin oxidoreductase | - | Family | |
PF09326 | NADH-ubiquinone oxidoreductase subunit G, C-terminal (NADH_dhqG_C) | NADH-ubiquinone oxidoreductase subunit G, C-terminal | - | Family | |
PF10588 | NADH-ubiquinone oxidoreductase-G iron-sulfur binding region (NADH-G_4Fe-4S_3) | NADH-ubiquinone oxidoreductase-G iron-sulfur binding region | - | Domain | |
PF00361 | Proton-conducting membrane transporter (Proton_antipo_M) | Proton-conducting membrane transporter | - | Family | |
PF01058 | NADH ubiquinone oxidoreductase, 20 Kd subunit (Oxidored_q6) | NADH ubiquinone oxidoreductase, 20 Kd subunit | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | Electron transport chain complex I (NADH dehydrogenase) and supercomplexes | H+ or Na+ translocating NADH dehydrogenase |