5LDK
Crystal structure of E.coli LigT complexed with ATP
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d5ldka_ | Alpha and beta proteins (a+b) | LigT-like | LigT-like | automated matches | automated matches | (Escherichia coli BL21(DE3) ) [TaxId: 469008 ], | SCOPe (2.08) |
B | d5ldkb_ | Alpha and beta proteins (a+b) | LigT-like | LigT-like | automated matches | automated matches | (Escherichia coli BL21(DE3) ) [TaxId: 469008 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | 2_5_RNA_ligase2_1 | e5ldkA1 | A: beta barrels | X: LigT-like | H: LigT-related (From Topology) | T: LigT-related | F: 2_5_RNA_ligase2_1 | ECOD (1.6) |
B | 2_5_RNA_ligase2_1 | e5ldkB1 | A: beta barrels | X: LigT-like | H: LigT-related (From Topology) | T: LigT-related | F: 2_5_RNA_ligase2_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.90.1140.10 | Alpha Beta | Alpha-Beta Complex | Cyclic Phosphodiesterase | Chain: A, | CATH (4.3.0) |
B | 3.90.1140.10 | Alpha Beta | Alpha-Beta Complex | Cyclic Phosphodiesterase | Chain: A, | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF13563 | 2'-5' RNA ligase superfamily (2_5_RNA_ligase2) | 2'-5' RNA ligase superfamily | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR009097 | Cyclic phosphodiesterase | Homologous Superfamily | |
IPR004175 | RNA 2',3'-cyclic phosphodiesterase | Family |