5X4K | pdb_00005x4k

The complex crystal structure of Pyrococcus furiosus RecJ and CMP


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ARecJe5x4kA2 A: alpha arraysX: HhH/H2THH: Cdc45 CID domain (From Topology)T: Cdc45 CID domainF: RecJECOD (1.6)
ADHHA1e5x4kA3 A: a+b three layersX: C-terminal domain in DHH phosphoesterases (From Topology)H: C-terminal domain in DHH phosphoesterases (From Topology)T: C-terminal domain in DHH phosphoesterasesF: DHHA1ECOD (1.6)
ADHHe5x4kA1 A: a/b three-layered sandwichesX: HAD domain-likeH: HAD domain-relatedT: DHH phosphoesterasesF: DHHECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.90.1640.30 Alpha Beta Alpha-Beta Complex inorganic pyrophosphatase (n-terminal core) CATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF21763DHH-CID domain (DHH_CID)DHH-CID domainDHH-CID (CMG Interacting Domain) domain is found in proteins that are members of DHH phosphatase family. This domain is located between the catalytic domains and consists of array of four helices with two 'kissing' loops. The DHH-CID domain contains ...Domain
PF02272DHHA1 domain (DHHA1)DHHA1 domainThis domain is often found adjacent to the DHH domain Pfam:PF01368 and is called DHHA1 for DHH associated domain. This domain is diagnostic of DHH subfamily 1 members [1]. This domains is also found in alanyl tRNA synthetase e.g. Swiss:P00957, sugges ...Domain
PF01368DHH family, N-terminal domain (DHH)DHH family, N-terminal domainIt is predicted that this family of proteins all perform a phosphoesterase function. This domain is found at the N-terminal of the single stranded DNA exonuclease RecJ. It shows an alpha-beta configuration [2]. Domain