5OYA
Unusual posttranslational modifications revealed in crystal structures of diatom Rubisco.
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
I | SCOP2B Superfamily | RuBisCO, small subunit | 8095091 | 3001622 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | RuBisCO, small subunit | 8095091 | 3001622 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | RuBisCO, small subunit | 8095091 | 3001622 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | RuBisCO, small subunit | 8095091 | 3001622 | SCOP2B (2022-06-29) |
M | SCOP2 Family | RuBisCO, small subunit | 8095090 | 4001455 | SCOP2 (2022-06-29) |
M | SCOP2 Superfamily | RuBisCO, small subunit | 8095091 | 3001622 | SCOP2 (2022-06-29) |
N | SCOP2B Superfamily | RuBisCO, small subunit | 8095091 | 3001622 | SCOP2B (2022-06-29) |
O | SCOP2B Superfamily | RuBisCO, small subunit | 8095091 | 3001622 | SCOP2B (2022-06-29) |
P | SCOP2B Superfamily | RuBisCO, small subunit | 8095091 | 3001622 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | RuBisCO_large_N | e5oyaA2 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
A | RuBisCO_large | e5oyaA1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
B | RuBisCO_large_N | e5oyaB2 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
B | RuBisCO_large | e5oyaB1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
D | RuBisCO_large_N | e5oyaD1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
D | RuBisCO_large | e5oyaD2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
E | RuBisCO_large_N | e5oyaE1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
E | RuBisCO_large | e5oyaE2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
F | RuBisCO_large_N | e5oyaF2 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
F | RuBisCO_large | e5oyaF1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
G | RuBisCO_large_N | e5oyaG2 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
G | RuBisCO_large | e5oyaG1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
H | RuBisCO_large_N | e5oyaH1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
H | RuBisCO_large | e5oyaH2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
C | RuBisCO_large_N | e5oyaC2 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
C | RuBisCO_large | e5oyaC1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
I | RuBisCO_small | e5oyaI1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: RuBisCO_small | ECOD (1.6) |
J | RuBisCO_small | e5oyaJ1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: RuBisCO_small | ECOD (1.6) |
K | RuBisCO_small | e5oyaK1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: RuBisCO_small | ECOD (1.6) |
L | RuBisCO_small | e5oyaL1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: RuBisCO_small | ECOD (1.6) |
M | RuBisCO_small | e5oyaM1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: RuBisCO_small | ECOD (1.6) |
N | RuBisCO_small | e5oyaN1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: RuBisCO_small | ECOD (1.6) |
O | RuBisCO_small | e5oyaO1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: RuBisCO_small | ECOD (1.6) |
P | RuBisCO_small | e5oyaP1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: RuBisCO_small | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02788 | Ribulose bisphosphate carboxylase large chain, N-terminal domain (RuBisCO_large_N) | Ribulose bisphosphate carboxylase large chain, N-terminal domain | The N-terminal domain of RuBisCO large chain adopts a ferredoxin-like fold. | Domain | |
PF00016 | Ribulose bisphosphate carboxylase large chain, catalytic domain (RuBisCO_large) | Ribulose bisphosphate carboxylase large chain, catalytic domain | The C-terminal domain of RuBisCO large chain is the catalytic domain adopting a TIM barrel fold. | Domain | |
PF02788 | Ribulose bisphosphate carboxylase large chain, N-terminal domain (RuBisCO_large_N) | Ribulose bisphosphate carboxylase large chain, N-terminal domain | The N-terminal domain of RuBisCO large chain adopts a ferredoxin-like fold. | Domain | |
PF00016 | Ribulose bisphosphate carboxylase large chain, catalytic domain (RuBisCO_large) | Ribulose bisphosphate carboxylase large chain, catalytic domain | The C-terminal domain of RuBisCO large chain is the catalytic domain adopting a TIM barrel fold. | Domain | |
PF00101 | Ribulose bisphosphate carboxylase, small chain (RuBisCO_small) | Ribulose bisphosphate carboxylase, small chain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Rubisco large subunit | ||||
Rubisco large subunit | ||||
Rubisco small subunit |
InterPro: Protein Family Classification InterPro Database Homepage
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
CSO | Parent Component: CYS :  AA0205 :  L-cysteine sulfenic acid MOD:00210 | |
HL2 | Parent Component: LEU :  AA0205 | |
HYP | Parent Component: PRO :  AA0205 , AA0030 :  L-cysteine sulfenic acid MOD:00210 , 4-hydroxy-L-proline MOD:00039 | |
KCX | Parent Component: LYS :  AA0205 , AA0030 | |
LOH | AA0205 , AA0030 | :  |
M3L | Parent Component: LYS :  AA0205 , AA0030 , AA0074 :  L-cysteine sulfenic acid MOD:00210 , 4-hydroxy-L-proline MOD:00039 , N6,N6,N6-trimethyl-L-lysine MOD:00083 | |
SNC | Parent Component: CYS :  AA0205 , AA0030 , AA0074 | |
CSO | Parent Component: CYS :  AA0205 , AA0030 , AA0074 , AA0205 :  L-cysteine sulfenic acid MOD:00210 , 4-hydroxy-L-proline MOD:00039 , N6,N6,N6-trimethyl-L-lysine MOD:00083 , L-cysteine sulfenic acid MOD:00210 | |
HL2 | Parent Component: LEU :  AA0205 , AA0030 , AA0074 , AA0205 | |
HYP | Parent Component: PRO :  AA0205 , AA0030 , AA0074 , AA0205 , AA0030 :  L-cysteine sulfenic acid MOD:00210 , 4-hydroxy-L-proline MOD:00039 , N6,N6,N6-trimethyl-L-lysine MOD:00083 , L-cysteine sulfenic acid MOD:00210 , 4-hydroxy-L-proline MOD:00039 | |
KCX | Parent Component: LYS :  AA0205 , AA0030 , AA0074 , AA0205 , AA0030 | |
LOH | AA0205 , AA0030 , AA0074 , AA0205 , AA0030 | :  |
M3L | Parent Component: LYS :  AA0205 , AA0030 , AA0074 , AA0205 , AA0030 , AA0074 :  L-cysteine sulfenic acid MOD:00210 , 4-hydroxy-L-proline MOD:00039 , N6,N6,N6-trimethyl-L-lysine MOD:00083 , L-cysteine sulfenic acid MOD:00210 , 4-hydroxy-L-proline MOD:00039 , N6,N6,N6-trimethyl-L-lysine MOD:00083 | |
SNC | Parent Component: CYS :  AA0205 , AA0030 , AA0074 , AA0205 , AA0030 , AA0074 |