6CRJ

Mouse norovirus model using the crystal structure of MNV P domain and the Norwalkvirus shell domain

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth B]	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8033958	3000918	SCOP2B (2022-06-29)
B [auth A]	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8033958	3000918	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8033958	3000918	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth B]	Calici_coat_C_C	e6crjB2	A: beta barrels	X: cradle loop barrel	H: Capsid protein protrusion (P) domain (From Topology)	T: Capsid protein protrusion (P) domain	F: Calici_coat_C_C	ECOD (1.6)
A [auth B]	UNK_F_TYPE	e6crjB3	A: beta barrels	X: cradle loop barrel	H: Capsid protein protrusion (P) domain (From Topology)	T: Capsid protein protrusion (P) domain	F: UNK_F_TYPE	ECOD (1.6)
A [auth B]	Rhv_4	e6crjB1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Rhv_4	ECOD (1.6)
B [auth A]	Calici_coat_C_C	e6crjA1	A: beta barrels	X: cradle loop barrel	H: Capsid protein protrusion (P) domain (From Topology)	T: Capsid protein protrusion (P) domain	F: Calici_coat_C_C	ECOD (1.6)
B [auth A]	UNK_F_TYPE	e6crjA2	A: beta barrels	X: cradle loop barrel	H: Capsid protein protrusion (P) domain (From Topology)	T: Capsid protein protrusion (P) domain	F: UNK_F_TYPE	ECOD (1.6)
B [auth A]	Rhv_4	e6crjA3	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Rhv_4	ECOD (1.6)
C	Calici_coat_C_C	e6crjC1	A: beta barrels	X: cradle loop barrel	H: Capsid protein protrusion (P) domain (From Topology)	T: Capsid protein protrusion (P) domain	F: Calici_coat_C_C	ECOD (1.6)
C	UNK_F_TYPE	e6crjC3	A: beta barrels	X: cradle loop barrel	H: Capsid protein protrusion (P) domain (From Topology)	T: Capsid protein protrusion (P) domain	F: UNK_F_TYPE	ECOD (1.6)
C	Rhv_4	e6crjC2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Rhv_4	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth B], B [auth A], C	PF00915	Calicivirus coat protein (Calici_coat)	Calicivirus coat protein	Rabbit hemorrhagic disease virus (RHDV) which causes a highly contagious disease of wild and domestic rabbits belongs to the family Caliciviridae [2]. The capsid protein self assembles to form an icosahedral capsid with a T=3 symmetry. It is about 3 ...	Rabbit hemorrhagic disease virus (RHDV) which causes a highly contagious disease of wild and domestic rabbits belongs to the family Caliciviridae [2]. The capsid protein self assembles to form an icosahedral capsid with a T=3 symmetry. It is about 38nm in diameter and consists of 180 capsid proteins. The capsid encapsulates the genomic RNA and VP2 proteins and attaches the virion to target cells by binding histo-blood group antigens present on gastroduodenal epithelial cells. The Shell domain (S domain) contains elements essential for the formation of the icosahedron. The Protruding domain (P domain) is divided into sub-domains P1 and P2. An hypervariable region in P2 is thought to play an important role in receptor binding and immune reactivity.	Domain
A [auth B], B [auth A], C	PF08435	Calicivirus coat protein C-terminal (Calici_coat_C)	Calicivirus coat protein C-terminal	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B], B [auth A], C	Norwalk virus, MNV-1 capsid protein chimera	identical protein binding protein binding binding	-	virion component host cellular component host intracellular part cellular anatomical structure host cell cytoplasm host cell part host intracellular region viral capsid T=3 icosahedral viral capsid icosahedral viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B], B [auth A], C	IPR029053	Viral coat protein subunit	Homologous Superfamily
A [auth B], B [auth A], C	IPR004005	Calicivirus coat protein	Domain
A [auth B], B [auth A], C	IPR013643	Calicivirus coat protein C-terminal	Domain
A [auth B], B [auth A], C	IPR033703	Picornavirus/Calicivirus coat protein	Domain
A [auth B], B [auth A], C	IPR029053	Viral coat protein subunit	Homologous Superfamily
A [auth B], B [auth A], C	IPR004005	Calicivirus coat protein	Domain
A [auth B], B [auth A], C	IPR013643	Calicivirus coat protein C-terminal	Domain
A [auth B], B [auth A], C	IPR033703	Picornavirus/Calicivirus coat protein	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.