6R86

Yeast Vms1-60S ribosomal subunit complex (post-state)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
B [auth X]SCOP2B SuperfamilyPentein 8036230 3000640 SCOP2B (2022-06-29)
C [auth i]SCOP2B SuperfamilyRibosomal protein L34e-like 8053547 3002203 SCOP2B (2022-06-29)
D [auth J]SCOP2B SuperfamilyRibosomal L30p/L7e protein, N-terminal domain-lke 8052916 3002152 SCOP2B (2022-06-29)
D [auth J]SCOP2B SuperfamilyRibosomal protein L30p/L7e 8052917 3001378 SCOP2B (2022-06-29)
F [auth K]SCOP2B SuperfamilyL30e-like 8063962 3001739 SCOP2B (2022-06-29)
G [auth k]SCOP2B SuperfamilyRibosomal protein L36e 8053115 3002161 SCOP2B (2022-06-29)
I [auth l]SCOP2B SuperfamilyZn-binding ribosomal proteins 8080044 3001320 SCOP2B (2022-06-29)
J [auth M]SCOP2B SuperfamilyRL5-like 8099392 3001709 SCOP2B (2022-06-29)
K [auth m]SCOP2B SuperfamilyRibosomal L38e protein-like 8053562 3002206 SCOP2B (2022-06-29)
L [auth N]SCOP2B SuperfamilyRibosomal protein L13e-like 8053159 3002162 SCOP2B (2022-06-29)
M [auth n]SCOP2B SuperfamilyRibosomal protein L39e 8078549 3001756 SCOP2B (2022-06-29)
P [auth p]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8082481 3000210 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyRibosomal protein L13 8066053 3001134 SCOP2B (2022-06-29)
R [auth 5]SCOP2B SuperfamilyRibosomal protein L22 8076708 3001078 SCOP2B (2022-06-29)
SSCOP2B SuperfamilyRibosomal proteins L15p and L18e 8095970 3001045 SCOP2B (2022-06-29)
T [auth s]SCOP2B SuperfamilyRibosomal protein L16p/L10e 8079407 3000884 SCOP2B (2022-06-29)
U [auth T]SCOP2B SuperfamilyRibosomal protein L19 (L19e) 8077485 3000890 SCOP2B (2022-06-29)
X [auth W]SCOP2B Superfamily60S Ribosomal protein L22e 8053058 3002158 SCOP2B (2022-06-29)
AA [auth x]SCOP2B Superfamily50S Ribosomal protein L14-like 8103364 3000433 SCOP2B (2022-06-29)
EA [auth Z]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8095962 3000210 SCOP2B (2022-06-29)
FA [auth a]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8076760 3000334 SCOP2B (2022-06-29)
GA [auth b]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8053046 3000334 SCOP2B (2022-06-29)
IA [auth c]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8077127 3001045 SCOP2B (2022-06-29)
JA [auth D]SCOP2B SuperfamilyZn-binding ribosomal proteins 8103126 3001320 SCOP2B (2022-06-29)
KA [auth d]SCOP2B SuperfamilyRibosomal protein L29e 8053045 3002157 SCOP2B (2022-06-29)
MA [auth e]SCOP2B SuperfamilyL30e-like 8039862 3001739 SCOP2B (2022-06-29)
NA [auth F]SCOP2B SuperfamilyTranslational proteins 8078363 3000811 SCOP2B (2022-06-29)
PA [auth G]SCOP2B Superfamily60S ribosomal protein L4 C-terminal domain-like 8052815 3002143 SCOP2B (2022-06-29)
PA [auth G]SCOP2B SuperfamilyRibosomal protein L4 8052816 3001146 SCOP2B (2022-06-29)
RA [auth H]SCOP2B SuperfamilyTranslational machinery components 8052875 3000571 SCOP2B (2022-06-29)
SA [auth h]SCOP2B SuperfamilyTranslational proteins 8087451 3000811 SCOP2B (2022-06-29)
TA [auth I]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8053109 3000334 SCOP2B (2022-06-29)
UA [auth L]SCOP2B SuperfamilyRibosomal protein L1p/L10e-like 8098448 3001911 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
B [auth X]eIF-6e6r86X1 A: a+b duplicates or obligate multimersX: Pentein (From Topology)H: Pentein (From Topology)T: PenteinF: eIF-6ECOD (1.6)
C [auth i]Ribosomal_L34ee6r86i1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: RPL34 (From Topology)T: RPL34F: Ribosomal_L34eECOD (1.6)
D [auth J]Ribosomal_L30_1e6r86J1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30_1ECOD (1.6)
E [auth j]Ribosomal_L29_2e6r86j1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: Ribosomal_L29_2ECOD (1.6)
F [auth K]Ribosomal_L7Ae_1e6r86K1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7Ae_1ECOD (1.6)
G [auth k]Ribosomal_L36ee6r86k1 A: alpha arraysX: 60S ribosomal protein rpL36 (L36e) (From Topology)H: 60S ribosomal protein rpL36 (L36e) (From Topology)T: 60S ribosomal protein rpL36 (L36e)F: Ribosomal_L36eECOD (1.6)
H [auth 7]Ribosomal_L6_2e6r8671 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6_2ECOD (1.6)
H [auth 7]Ribosomal_L6e6r8672 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6ECOD (1.6)
I [auth l]Ribosomal_L37ee6r86l1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L37eECOD (1.6)
J [auth M]Ribosomal_L5_Ce6r86M1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: Ribosomal_L5_CECOD (1.6)
K [auth m]Ribosomal_L38ee6r86m1 A: a+b two layersX: SRP9/14-likeH: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology)T: Signal recognition particle alu RNA binding heterodimer SRP9/14-relatedF: Ribosomal_L38eECOD (1.6)
L [auth N]Ribosomal_L13ee6r86N1 A: extended segmentsX: RPL13 (From Topology)H: RPL13 (From Topology)T: RPL13F: Ribosomal_L13eECOD (1.6)
M [auth n]Ribosomal_L39e6r86n1 A: extended segmentsX: Ribosomal protein L39e (From Topology)H: Ribosomal protein L39e (From Topology)T: Ribosomal protein L39eF: Ribosomal_L39ECOD (1.6)
N [auth O]Ribosomal_L14ee6r86O1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L14eECOD (1.6)
O [auth o]Ribosomal_L40ee6r86o1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L40eECOD (1.6)
P [auth p]Ribosomal_L15ee6r86p1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L15eECOD (1.6)
QRibosomal_L13e6r86Q1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
R [auth 5]Ribosomal_L22e6r8651 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
SRibosomal_L18e6r86S1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L18ECOD (1.6)
T [auth s]Ribosomal_L16e6r86s1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: Ribosomal_L16ECOD (1.6)
U [auth T]Ribosomal_L19e_Ne6r86T1 A: alpha arraysX: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) N-terminal domainF: Ribosomal_L19e_NECOD (1.6)
U [auth T]Ribosomal_L19e_Ce6r86T2 A: alpha bundlesX: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) C-terminal domainF: Ribosomal_L19e_CECOD (1.6)
V [auth U]Ribosomal_L18Ae6r86U2 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: Ribosomal_L18AECOD (1.6)
W [auth V]Ribosomal_L21ee6r86V1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L21eECOD (1.6)
X [auth W]Ribosomal_L22ee6r86W1 A: a+b two layersX: Ribosomal protein L22e (From Topology)H: Ribosomal protein L22e (From Topology)T: Ribosomal protein L22eF: Ribosomal_L22eECOD (1.6)
Y [auth P]Ribosomal_L11e6r86P1 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: Ribosomal_L11ECOD (1.6)
Y [auth P]Ribosomal_L11_Ne6r86P2 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: Ribosomal_L11_NECOD (1.6)
Z [auth r]Ribosomal_L10e6r86r1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: Ribosomal_L10ECOD (1.6)
AA [auth x]Ribosomal_L14e6r86x1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
CA [auth Y]Ribosomal_L24ee6r86Y1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_L24eECOD (1.6)
EA [auth Z]Ribosomal_L23_3e6r86Z1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_3ECOD (1.6)
FA [auth a]Ribosomal_L26e6r86a1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L26ECOD (1.6)
GA [auth b]Ribosomal_L27ee6r86b1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L27eECOD (1.6)
HA [auth C]Ribosomal_L44e6r86C1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L44ECOD (1.6)
IA [auth c]Ribosomal_L18e6r86c1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L18ECOD (1.6)
JA [auth D]Ribosomal_L37aee6r86D1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L37aeECOD (1.6)
KA [auth d]Ribosomal_L29ee6r86d1 A: extended segmentsX: RPL29 (From Topology)H: RPL29 (From Topology)T: RPL29F: Ribosomal_L29eECOD (1.6)
LA [auth E]Ribosomal_L2_1e6r86E1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_L2_1ECOD (1.6)
LA [auth E]Ribosomal_L2_C_2e6r86E2 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L2_C_2ECOD (1.6)
MA [auth e]Ribosomal_L7Aee6r86e1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7AeECOD (1.6)
NA [auth F]Ribosomal_L3e6r86F1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
OA [auth f]Ribosomal_L31ee6r86f1 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: Ribosomal_L31eECOD (1.6)
PA [auth G]Ribosomal_L4e6r86G2 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
PA [auth G]Ribos_L4_asso_Ce6r86G1 A: extended segmentsX: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)T: C-terminal helical region in 60S ribosomal protein L4 (L4p)F: Ribos_L4_asso_CECOD (1.6)
QA [auth g]Ribosomal_L32ee6r86g1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L32e (From Topology)T: Ribosomal protein L32eF: Ribosomal_L32eECOD (1.6)
RA [auth H]Ribosomal_L5ee6r86H1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_L5eECOD (1.6)
SA [auth h]Ribosomal_L35Aee6r86h1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L35AeECOD (1.6)
TA [auth I]Ribosomal_L6ee6r86I1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L6eECOD (1.6)
UA [auth L]Ribosomal_L1_2nd_1e6r86L2 A: a+b two layersX: a+b domain in Ribosomal protein L1 (From Topology)H: a+b domain in Ribosomal protein L1 (From Topology)T: a+b domain in Ribosomal protein L1F: Ribosomal_L1_2nd_1ECOD (1.6)
UA [auth L]Ribosomal_L1_1st_1e6r86L1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Rossmann-like domain in Ribosomal protein L1 (From Topology)T: Rossmann-like domain in Ribosomal protein L1F: Ribosomal_L1_1st_1ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth R]PF18826Bacteroidetes VLRF1 release factor (bVLRF1)Bacteroidetes VLRF1 release factorArchaeo-eukaryotic release factor domain family belonging to the VLRF1 clade observed primarily in the bacteroidetes bacterial lineage. Contains a conserved glutamine residue in the release factor catalytic loop, suggesting it functions as an active ...Archaeo-eukaryotic release factor domain family belonging to the VLRF1 clade observed primarily in the bacteroidetes bacterial lineage. Contains a conserved glutamine residue in the release factor catalytic loop, suggesting it functions as an active peptidyl-tRNA hydrolase at the ribosome [1].
Domain
B [auth X]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
B [auth X]PF01912eIF-6 family (eIF-6)eIF-6 family- Family
D [auth J]PF08079Ribosomal L30 N-terminal domain (Ribosomal_L30_N)Ribosomal L30 N-terminal domainThis presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1].Domain
D [auth J]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
F [auth K]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
H [auth 7]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
J [auth M]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
J [auth M]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
L [auth N]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
L [auth N]PF01294Ribosomal protein L13e (Ribosomal_L13e)Ribosomal protein L13e- Family
N [auth O]PF01020Ribosomal L40e family (Ribosomal_L40e)Ribosomal L40e family- Family
N [auth O]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
N [auth O]PF00467KOW motif (KOW)KOW motif- Family
PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
R [auth 5]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
PF17135Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18)Ribosomal protein 60S L18 and 50S L18e- Family
PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
U [auth T]PF01280Ribosomal protein L19e (Ribosomal_L19e)Ribosomal protein L19e- Family
V [auth U]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A.Domain
W [auth V]PF01157Ribosomal protein L21e (Ribosomal_L21e)Ribosomal protein L21e- Family
X [auth W]PF01776Ribosomal L22e protein family (Ribosomal_L22e)Ribosomal L22e protein family- Family
Y [auth P]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.Domain
Y [auth P]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain
CA [auth Y]PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24e- Domain
EA [auth Z]PF03939Ribosomal protein L23, N-terminal domain (Ribosomal_L23eN)Ribosomal protein L23, N-terminal domain- Family
EA [auth Z]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
HA [auth C]PF00935Ribosomal protein L44 (Ribosomal_L44)Ribosomal protein L44- Family
HA [auth C]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
JA [auth D]PF01779Ribosomal L29e protein family (Ribosomal_L29e)Ribosomal L29e protein family- Family
JA [auth D]PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
LA [auth E]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
LA [auth E]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
LA [auth E]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
NA [auth F]PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
NA [auth F]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
PA [auth G]PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins.Domain
PA [auth G]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
PA [auth G]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
RA [auth H]PF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
RA [auth H]PF14204Ribosomal L18 C-terminal region (Ribosomal_L18_c)Ribosomal L18 C-terminal regionThis domain is the C-terminal end of ribosomal L18/L5 proteins.Domain
RA [auth H]PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35Ae- Domain
TA [auth I]PF01199Ribosomal protein L34e (Ribosomal_L34e)Ribosomal protein L34e- Family
TA [auth I]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
UA [auth L]PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10.Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth R]Protein VMS1,Protein VMS1,Protein VMS1,Protein VMS1,Protein VMS1,Protein VMS1,Protein VMS1,Protein VMS1,Protein VMS1,Protein VMS1
B [auth X]Eukaryotic translation initiation factor 6
C [auth i]60S ribosomal protein L34-A
D [auth J]60S ribosomal protein L7-A
E [auth j]60S ribosomal protein L35-A
F [auth K]60S ribosomal protein L8-A
G [auth k]60S ribosomal protein L36-A
H [auth 7]60S ribosomal protein L9-A
I [auth l]60S ribosomal protein L37-A
J [auth M]60S ribosomal protein L11-B
K [auth m]60S ribosomal protein L38
L [auth N]60S ribosomal protein L13-A
M [auth n]60S ribosomal protein L39
N [auth O]60S ribosomal protein L14-A
O [auth o]Ubiquitin-60S ribosomal protein L40
P [auth p]60S ribosomal protein L15-A
60S ribosomal protein L16-A
R [auth 5]60S ribosomal protein L17-A
60S ribosomal protein L18-A
T [auth s]60S ribosomal protein L10
U [auth T]60S ribosomal protein L19-A
V [auth U]60S ribosomal protein L20-A
W [auth V]60S ribosomal protein L21-A
X [auth W]60S ribosomal protein L22-A
Y [auth P]60S ribosomal protein L12-A
Z [auth r]60S acidic ribosomal protein P0
AA [auth x]60S ribosomal protein L23-A
BA [auth 3]5S ribosomal RNA---
CA [auth Y]60S ribosomal protein L24-A
DA [auth 4]5.8S ribosomal RNA---
EA [auth Z]60S ribosomal protein L25
FA [auth a]60S ribosomal protein L26-A
GA [auth b]60S ribosomal protein L27-A
HA [auth C]60S ribosomal protein L42-A
IA [auth c]60S ribosomal protein L28
JA [auth D]60S ribosomal protein L43-A
KA [auth d]60S ribosomal protein L29
LA [auth E]60S ribosomal protein L2-A
MA [auth e]60S ribosomal protein L30
NA [auth F]60S ribosomal protein L3
OA [auth f]60S ribosomal protein L31-A
PA [auth G]60S ribosomal protein L4-A
QA [auth g]60S ribosomal protein L32
RA [auth H]60S ribosomal protein L5
SA [auth h]60S ribosomal protein L33-A
TA [auth I]60S ribosomal protein L6-A
UA [auth L]60S ribosomal protein L1-A
VA [auth 1]25S ribosomal RNA---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth R]IPR013087Zinc finger C2H2-typeDomain
A [auth R]IPR036770Ankyrin repeat-containing domain superfamilyHomologous Superfamily
A [auth R]IPR041175VLRF1/Vms1Domain
A [auth R]IPR047139tRNA endonuclease ANKZF1/VMS1Family
B [auth X]IPR002769Translation initiation factor IF6Family
C [auth i]IPR008195Large ribosomal subunit protein eL34Family
C [auth i]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
D [auth J]IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
D [auth J]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
D [auth J]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotesDomain
D [auth J]IPR039699Large ribosomal subunit protein uL30Family
D [auth J]IPR005998Large ribosomal subunit protein uL30, eukaryoticFamily
D [auth J]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
D [auth J]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
E [auth j]IPR045059Large ribosomal subunit protein uL29, eukaryotesFamily
E [auth j]IPR001854Large ribosomal subunit protein uL29Family
E [auth j]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
E [auth j]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
F [auth K]IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
F [auth K]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
F [auth K]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
F [auth K]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
F [auth K]IPR001921Large ribosomal subunit protein eL8, eukaryotaFamily
F [auth K]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
G [auth k]IPR000509Large ribosomal subunit protein eL36Family
G [auth k]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
H [auth 7]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
H [auth 7]IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
H [auth 7]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
H [auth 7]IPR000702Large ribosomal subunit protein uL6-likeFamily
I [auth l]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
I [auth l]IPR001569Large ribosomal subunit protein eL37Family
I [auth l]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
I [auth l]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
J [auth M]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
J [auth M]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
J [auth M]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
J [auth M]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
J [auth M]IPR002132Large ribosomal subunit protein uL5Family
K [auth m]IPR002675Large ribosomal subunit protein eL38Family
K [auth m]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
L [auth N]IPR001380Large ribosomal subunit protein eL13Family
L [auth N]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
M [auth n]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
M [auth n]IPR000077Large ribosomal subunit protein eL39Family
M [auth n]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
N [auth O]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
N [auth O]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
N [auth O]IPR039660Large ribosomal subunit protein eL14Family
N [auth O]IPR041985Large ribosomal subunit protein eL14, KOW motifDomain
N [auth O]IPR002784Large ribosomal subunit protein eL14 domainDomain
N [auth O]IPR005824KOWDomain
O [auth o]IPR019954Ubiquitin conserved siteConserved Site
O [auth o]IPR038587Large ribosomal subunit protein eL40 superfamilyHomologous Superfamily
O [auth o]IPR000626Ubiquitin-like domainDomain
O [auth o]IPR019956Ubiquitin domainDomain
O [auth o]IPR050158Ubiquitin and ubiquitin-likeFamily
O [auth o]IPR001975Large ribosomal subunit protein eL40 domainDomain
O [auth o]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
P [auth p]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
P [auth p]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
P [auth p]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
P [auth p]IPR000439Large ribosomal subunit protein eL15Family
IPR005755Large ribosomal subunit protein uL13, eukaryotic/archaealFamily
IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
IPR005822Large ribosomal subunit protein uL13Family
IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
R [auth 5]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
R [auth 5]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
R [auth 5]IPR001063Large ribosomal subunit protein uL22Family
R [auth 5]IPR005721Large ribosomal subunit protein uL22, eukaryotic/archaealFamily
IPR021131Large ribosomal subunit protein uL15/eL18Domain
IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
IPR000039Large ribosomal subunit protein eL18Family
IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
T [auth s]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
T [auth s]IPR001197Large ribosomal subunit protein uL16, eukaryotes/archaeaFamily
T [auth s]IPR016180Large ribosomal subunit protein uL16 domainDomain
T [auth s]IPR047873Large ribosomal subunit protein uL16Family
T [auth s]IPR018255Large ribosomal subunit protein uL16, conserved site, eukaryotes/archaeaConserved Site
U [auth T]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
U [auth T]IPR039547Large ribosomal subunit protein eL19Family
U [auth T]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
U [auth T]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
U [auth T]IPR000196Large ribosomal subunit protein eL19 domainDomain
U [auth T]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
V [auth U]IPR028877Large ribosomal subunit protein eL20Family
V [auth U]IPR023573Large ribosomal subunit protein eL20 domainDomain
V [auth U]IPR021138Large ribosomal subunit protein eL20, eukaryotesFamily
W [auth V]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
W [auth V]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
W [auth V]IPR001147Large ribosomal subunit protein eL21Family
W [auth V]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
X [auth W]IPR002671Large ribosomal subunit protein eL22Family
X [auth W]IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily
Y [auth P]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
Y [auth P]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
Y [auth P]IPR000911Ribosomal protein uL11Family
Y [auth P]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
Y [auth P]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
Y [auth P]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
Z [auth r]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
Z [auth r]IPR001790Large ribosomal subunit protein uL10Family
Z [auth r]IPR043164Large ribosomal subunit protein uL10-like, insertion domain superfamilyHomologous Superfamily
Z [auth r]IPR030670Large ribosomal subunit protein uL10, eukaryotesFamily
Z [auth r]IPR050323Universal ribosomal protein uL10Family
Z [auth r]IPR040637Large ribosomal subunit protein uL10-like, insertion domainDomain
AA [auth x]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
AA [auth x]IPR000218Large ribosomal subunit protein uL14Family
AA [auth x]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
CA [auth Y]IPR000988Large ribosomal subunit protein eL24-relatedFamily
CA [auth Y]IPR023442Large ribosomal subunit protein eL24, conserved siteConserved Site
CA [auth Y]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
EA [auth Z]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
EA [auth Z]IPR013025Large ribosomal subunit protein uL23-likeFamily
EA [auth Z]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
EA [auth Z]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
EA [auth Z]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
FA [auth a]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
FA [auth a]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
FA [auth a]IPR005824KOWDomain
FA [auth a]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
FA [auth a]IPR005756Large ribosomal subunit protein uL24, eukaryotic/archaealFamily
FA [auth a]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
GA [auth b]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
GA [auth b]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
GA [auth b]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
GA [auth b]IPR001141Large ribosomal subunit protein eL27Family
GA [auth b]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
HA [auth C]IPR053708Eukaryotic Ribosomal Large Subunit eL42Homologous Superfamily
HA [auth C]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
HA [auth C]IPR000552Large ribosomal subunit protein eL42Family
IA [auth c]IPR021131Large ribosomal subunit protein uL15/eL18Domain
IA [auth c]IPR030878Large ribosomal subunit protein uL15Family
IA [auth c]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
IA [auth c]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
JA [auth D]IPR002674Large ribosomal subunit protein eL43Family
JA [auth D]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
JA [auth D]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
JA [auth D]IPR050522Eukaryotic ribosomal protein eL43Family
KA [auth d]IPR002673Large ribosomal subunit protein eL29Family
LA [auth E]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
LA [auth E]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
LA [auth E]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
LA [auth E]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
LA [auth E]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
LA [auth E]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
LA [auth E]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
LA [auth E]IPR002171Large ribosomal subunit protein uL2Family
MA [auth e]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
MA [auth e]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
MA [auth e]IPR039109Large ribosomal subunit protein eL30-likeFamily
MA [auth e]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
NA [auth F]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
NA [auth F]IPR045077Large ribosomal subunit protein uL3, archaeal/eukaryotic-typeFamily
NA [auth F]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
NA [auth F]IPR000597Large ribosomal subunit protein uL3Family
NA [auth F]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
OA [auth f]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
OA [auth f]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
OA [auth f]IPR000054Large ribosomal subunit protein eL31Family
PA [auth G]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
PA [auth G]IPR002136Large ribosomal subunit protein uL4Family
PA [auth G]IPR013000Large ribosomal subunit protein uL4, eukaryotic/archaeal, conserved siteConserved Site
PA [auth G]IPR045240Large ribosomal subunit protein uL4, eukaryotic and archaeal typeFamily
PA [auth G]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
QA [auth g]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
QA [auth g]IPR001515Large ribosomal subunit protein eL32Family
QA [auth g]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
RA [auth H]IPR005485Large ribosomal subunit protein uL18 eukaryotic/archaealFamily
RA [auth H]IPR025607Large ribosomal subunit protein uL18, C-terminal, eukaryotesDomain
SA [auth h]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
SA [auth h]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
SA [auth h]IPR001780Large ribosomal subunit protein eL33Family
SA [auth h]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
TA [auth I]IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
TA [auth I]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
TA [auth I]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
TA [auth I]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
TA [auth I]IPR000915Large ribosomal subunit protein eL6Family
UA [auth L]IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
UA [auth L]IPR023673Large ribosomal subunit protein uL1, conserved siteConserved Site
UA [auth L]IPR016095Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domainHomologous Superfamily
UA [auth L]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
UA [auth L]IPR002143Large ribosomal subunit protein uL1Family
UA [auth L]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily