6SV1 | pdb_00006sv1

Crystal structure of Rhodospirillum rubrum Rru_A0973 E34A variant

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d6sv1a1	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
A	d6sv1a2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
BA [auth b]	d6sv1b_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
C	d6sv1c1	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
C	d6sv1c2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
D	d6sv1d1	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
D	d6sv1d2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
E	d6sv1e1	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
E	d6sv1e2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
F	d6sv1f1	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
F	d6sv1f2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
G	d6sv1g1	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
G	d6sv1g2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
H	d6sv1h_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
I	d6sv1i1	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
I	d6sv1i2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
J	d6sv1j_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
K	d6sv1k1	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
K	d6sv1k2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
L	d6sv1l_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
M	d6sv1m_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
N	d6sv1n_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
O	d6sv1o_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
P	d6sv1p_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
Q	d6sv1q_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
R	d6sv1r_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
S	d6sv1s1	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
S	d6sv1s2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
T	d6sv1t1	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
T	d6sv1t2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
U	d6sv1u_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
V	d6sv1v1	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
V	d6sv1v2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
W	d6sv1w1	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
W	d6sv1w2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
X	d6sv1x1	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
X	d6sv1x2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
Y	d6sv1y_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
Z	d6sv1z1	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
Z	d6sv1z2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
AA [auth a]	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
BA [auth b]	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
CA [auth c]	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
DA [auth d]	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
X	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
Y	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
Z	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	ferrit_encaps	e6sv1A1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
AA [auth a]	ferrit_encaps	e6sv1a1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
B	ferrit_encaps	e6sv1B1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
BA [auth b]	ferrit_encaps	e6sv1b1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
C	ferrit_encaps	e6sv1C1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
CA [auth c]	ferrit_encaps	e6sv1c1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
D	ferrit_encaps	e6sv1D1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
DA [auth d]	ferrit_encaps	e6sv1d1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
E	ferrit_encaps	e6sv1E1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
F	ferrit_encaps	e6sv1F1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
G	ferrit_encaps	e6sv1G1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
H	ferrit_encaps	e6sv1H1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
I	ferrit_encaps	e6sv1I1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
J	ferrit_encaps	e6sv1J1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
K	ferrit_encaps	e6sv1K1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
L	ferrit_encaps	e6sv1L1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
M	ferrit_encaps	e6sv1M1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
N	ferrit_encaps	e6sv1N1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
O	ferrit_encaps	e6sv1O1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
P	ferrit_encaps	e6sv1P1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
Q	ferrit_encaps	e6sv1Q1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
R	ferrit_encaps	e6sv1R1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
S	ferrit_encaps	e6sv1S1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
T	ferrit_encaps	e6sv1T1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
U	ferrit_encaps	e6sv1U1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
V	ferrit_encaps	e6sv1V1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
W	ferrit_encaps	e6sv1W1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
X	ferrit_encaps	e6sv1X1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
Y	ferrit_encaps	e6sv1Y1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)
Z	ferrit_encaps	e6sv1Z1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: ferrit_encaps	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	PF22277	EncFtn-like (EncFtn-like)	EncFtn-like	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	Encapsulated Ferritin	oxidoreductase activity, acting on metal ions oxidoreductase activity ferroxidase activity oxidoreductase activity, acting on metal ions, oxygen as acceptor catalytic activity cation binding ion binding binding metal ion binding small molecule binding	intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis localization transport iron ion transport transition metal ion transport intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis localization transport iron ion transport transition metal ion transport monoatomic ion transport monoatomic cation transport establishment of localization metal ion transport	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle encapsulin nanocompartment

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	IPR009078	Ferritin-like superfamily	Homologous Superfamily
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	IPR030907	Encapsulin-associated ferritin-like	Family
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	IPR054581	Encapsulated ferritin-like	Family