6SYT
Structure of the SMG1-SMG8-SMG9 complex
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | F_UNCLASSIFIED | e6sytA2 | A: alpha bundles | X: Four-helical up-and-down bundle | H: FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) (From Topology) | T: FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) | F: F_UNCLASSIFIED | ECOD (1.6) |
A | PF15785 | e6sytA3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF15785 | ECOD (1.6) |
A | PF00454,PF02260 | e6sytA1 | A: a+b complex topology | X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology) | H: Protein kinase/SAICAR synthase/ATP-grasp | T: Protein kinase | F: PF00454,PF02260 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02260 | FATC domain (FATC) | FATC domain | - | Family | |
PF00454 | Phosphatidylinositol 3- and 4-kinase (PI3_PI4_kinase) | Phosphatidylinositol 3- and 4-kinase | - | Family | |
PF10220 | Smg8_Smg9 (Smg8_Smg9) | Smg8_Smg9 | - | Family | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR016024 | Armadillo-type fold | Homologous Superfamily | |
IPR003152 | FATC domain | Domain | |
IPR035175 | Serine/threonine-protein kinase SMG1, N-terminal | Domain | |
IPR011989 | Armadillo-like helical | Homologous Superfamily | |
IPR039414 | SMG1, PIKK catalytic domain | Domain | |
IPR018936 | Phosphatidylinositol 3/4-kinase, conserved site | Conserved Site | |
IPR000403 | Phosphatidylinositol 3-/4-kinase, catalytic domain | Domain | |
IPR031559 | Serine/threonine-protein kinase SMG1 | Family | |
IPR036940 | Phosphatidylinositol 3-/4-kinase, catalytic domain superfamily | Homologous Superfamily | |
IPR011009 | Protein kinase-like domain superfamily | Homologous Superfamily | |
IPR014009 | PIK-related kinase | Domain | |
IPR019354 | Nonsense-mediated mRNA decay factor SMG8-like | Family | |
IPR039177 | Nonsense-mediated mRNA decay factor SMG9 | Family | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |