6II6
Crystal structure of the Makes Caterpillars Floppy (MCF)-Like effector of Vibrio vulnificus MO6-24/O in complex with a human ADP-ribosylation factor 3 (ARF3)
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | d6ii6c1 | Alpha and beta proteins (a/b) | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | G proteins | automated matches | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
C | d6ii6c2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
D | d6ii6d1 | Alpha and beta proteins (a/b) | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | G proteins | automated matches | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
D | d6ii6d2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | DUF3242 | e6ii6A2 | A: alpha complex topology | X: uncharacterized domain of PaTox (From Topology) | H: uncharacterized domain of PaTox (From Topology) | T: uncharacterized domain of PaTox | F: DUF3242 | ECOD (1.6) |
A | UNK_F_TYPE | e6ii6A1 | A: a+b complex topology | X: Cysteine proteinases-like | H: Cysteine proteinases (From Topology) | T: Cysteine proteinases | F: UNK_F_TYPE | ECOD (1.6) |
B | DUF3242 | e6ii6B2 | A: alpha complex topology | X: uncharacterized domain of PaTox (From Topology) | H: uncharacterized domain of PaTox (From Topology) | T: uncharacterized domain of PaTox | F: DUF3242 | ECOD (1.6) |
B | UNK_F_TYPE | e6ii6B1 | A: a+b complex topology | X: Cysteine proteinases-like | H: Cysteine proteinases (From Topology) | T: Cysteine proteinases | F: UNK_F_TYPE | ECOD (1.6) |
C | Ras | e6ii6C1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
D | Ras | e6ii6D1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (utative) |
D | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF03543 | Yersinia/Haemophilus virulence surface antigen (Peptidase_C58) | Yersinia/Haemophilus virulence surface antigen | - | Family | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR000073 | Alpha/beta hydrolase fold-1 | Domain | |
IPR038383 | CGT/MARTX, cysteine protease (CPD) domain superfamily | Homologous Superfamily | |
IPR006473 | Peptidase C58, YopT-type domain | Domain | |
IPR029058 | Alpha/Beta hydrolase fold | Homologous Superfamily | |
IPR020974 | CGT/MARTX, cysteine protease (CPD) domain | Domain | |
IPR049824 | RtxA toxin-like, peptidase C80 cysteine binding domain | Domain | |
IPR020972 | Dermonecrotic/RTX toxin, membrane localization domain | Domain | |
IPR005225 | Small GTP-binding domain | Domain | |
IPR045872 | ADP-ribosylation factor 1-5 | Family | |
IPR024156 | Small GTPase superfamily, ARF type | Family | |
IPR006689 | Small GTPase superfamily, ARF/SAR type | Family | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |