Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
B [auth a]SCOP2B SuperfamilyWinged helix DNA-binding domain 8090991 3000034 SCOP2B (2022-06-29)
C [auth B]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like 8097826 3001397 SCOP2B (2022-06-29)
D [auth b]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8053150 3000068 SCOP2B (2022-06-29)
E [auth C]SCOP2B SuperfamilyRibosomal S3Ae-like 8053216 3002166 SCOP2B (2022-06-29)
G [auth d]SCOP2B SuperfamilyNucleic acid-binding proteins 8095265 3000135 SCOP2B (2022-06-29)
I [auth f]SCOP2B SuperfamilyRibosomal protein S30e-like 8053455 3002190 SCOP2B (2022-06-29)
J [auth G]SCOP2B SuperfamilyRibosomal protein S7 8066001 3000799 SCOP2B (2022-06-29)
O [auth J]SCOP2B Superfamily50S Ribosomal protein L14-like 8053075 3000433 SCOP2B (2022-06-29)
Q [auth L]SCOP2B SuperfamilyWinged helix DNA-binding domain 8055720 3000034 SCOP2B (2022-06-29)
R [auth N]SCOP2B SuperfamilyL30e-like 8063980 3001739 SCOP2B (2022-06-29)
T [auth R]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8082683 3000100 SCOP2B (2022-06-29)
V [auth T]SCOP2B SuperfamilyS13-like H2TH domain 8101439 3000053 SCOP2B (2022-06-29)
W [auth U]SCOP2B SuperfamilyWinged helix DNA-binding domain 8089322 3000034 SCOP2B (2022-06-29)
X [auth V]SCOP2B SuperfamilyRibosomal protein S10 8097814 3001336 SCOP2B (2022-06-29)
Y [auth W]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8053139 3000068 SCOP2B (2022-06-29)
CA [auth M]SCOP2B SuperfamilyNucleic acid-binding proteins 8052746 3000135 SCOP2B (2022-06-29)
CA [auth M]SCOP2B SuperfamilyAlpha-L RNA-binding motif 8052745 3001473 SCOP2B (2022-06-29)
CA [auth M]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8052747 3000334 SCOP2B (2022-06-29)
EA [auth P]SCOP2B SuperfamilyHomeodomain-like 8052958 3000001 SCOP2B (2022-06-29)
EA [auth P]SCOP2B SuperfamilyS15/NS1 RNA-binding domain 8052959 3001284 SCOP2B (2022-06-29)
FA [auth X]SCOP2B SuperfamilyTranslational machinery components 8097824 3000571 SCOP2B (2022-06-29)
GA [auth Y]SCOP2B SuperfamilyRibosomal protein S8 8079081 3000709 SCOP2B (2022-06-29)
DA [auth O]SCOP2B SuperfamilyRibosomal S17 N-terminal domain-like 8052708 3002138 SCOP2B (2022-06-29)
DA [auth O]SCOP2B SuperfamilyNucleic acid-binding proteins 8052707 3000135 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
B [auth a]Ribosomal_S25e7jqca1 A: alpha arraysX: HTHH: HTHT: wingedF: Ribosomal_S25ECOD (1.6)
C [auth B]Ribosomal_S2_2e7jqcB1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: Ribosomal_S2_2ECOD (1.6)
D [auth b]Ribosomal_S26ee7jqcb1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S26eECOD (1.6)
E [auth C]Ribosomal_S3Ae_Ne7jqcC2 A: beta barrelsX: Ribosomal protein L25-likeH: 40S ribosomal protein S3A N-terminal domain (From Topology)T: 40S ribosomal protein S3A N-terminal domainF: Ribosomal_S3Ae_NECOD (1.6)
E [auth C]Ribosomal_S3Ae_Ce7jqcC1 A: a+b two layersX: T-foldH: 40S ribosomal protein S3A C-terminal domain (From Topology)T: 40S ribosomal protein S3A C-terminal domainF: Ribosomal_S3Ae_CECOD (1.6)
F [auth D]Ribosomal_S5_C_1e7jqcD2 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S5_C_1ECOD (1.6)
F [auth D]Ribosomal_S5_3e7jqcD1 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: Ribosomal_S5_3ECOD (1.6)
F [auth D]Ribosomal_S5_2e7jqcD3 A: extended segmentsX: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)T: N-terminal region in 40S ribosomal protein rpS2 (S5p)F: Ribosomal_S5_2ECOD (1.6)
G [auth d]Ribosomal_S28ee7jqcd1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S28eECOD (1.6)
H [auth E]Ribosomal_S3_Ce7jqcE1 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: Ribosomal_S3_CECOD (1.6)
H [auth E]KH_2_3e7jqcE2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: KH_2_3ECOD (1.6)
I [auth f]Ribosomal_S30e7jqcf1 A: extended segmentsX: 40S ribosomal protein S30 (S30e) (From Topology)H: 40S ribosomal protein S30 (S30e) (From Topology)T: 40S ribosomal protein S30 (S30e)F: Ribosomal_S30ECOD (1.6)
J [auth G]Ribosomal_S7_1e7jqcG1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: Ribosomal_S7_1ECOD (1.6)
N [auth I]Ribosomal_S7e_Ne7jqcI1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: Ribosomal_S7e_NECOD (1.6)
N [auth I]Ribosomal_S7e_C_1e7jqcI2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: Ribosomal_S7e_C_1ECOD (1.6)
O [auth J]Ribosomal_S8ee7jqcJ1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_S8eECOD (1.6)
Q [auth L]S10_plectine7jqcL1 A: alpha arraysX: HTHH: HTHT: wingedF: S10_plectinECOD (1.6)
R [auth N]Ribosomal_L7Aee7jqcN1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7AeECOD (1.6)
S [auth Q]Ribosomal_S19e7jqcQ1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: Ribosomal_S19ECOD (1.6)
T [auth R]Ribosomal_S9e7jqcR1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S9ECOD (1.6)
U [auth S]Ribosomal_S17ee7jqcS1 A: alpha arraysX: HTHH: HTHT: FF domainF: Ribosomal_S17eECOD (1.6)
V [auth T]Ribosomal_S13e7jqcT1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: Ribosomal_S13ECOD (1.6)
W [auth U]Ribosomal_S19ee7jqcU1 A: alpha arraysX: HTHH: HTHT: wingedF: Ribosomal_S19eECOD (1.6)
X [auth V]Ribosomal_S10_1e7jqcV1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: Ribosomal_S10_1ECOD (1.6)
Y [auth W]Ribosomal_S21ee7jqcW1 A: a+b two layersX: 40S ribosomal protein rpS21 (S21e) (From Topology)H: 40S ribosomal protein rpS21 (S21e) (From Topology)T: 40S ribosomal protein rpS21 (S21e)F: Ribosomal_S21eECOD (1.6)
ZRibosomal_S24ee7jqcZ1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_S24eECOD (1.6)
CA [auth M]Ribosomal_S4ee7jqcM3 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S4eECOD (1.6)
CA [auth M]40S_S4_Ce7jqcM1 A: beta barrelsX: SH3H: SH3T: SH3F: 40S_S4_CECOD (1.6)
CA [auth M]RS4NTe7jqcM2 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: RS4NTECOD (1.6)
EA [auth P]Ribosomal_S13_Ne7jqcP2 A: alpha arraysX: HTHH: 40S ribosomal protein S13 N-terminal domain (From Topology)T: 40S ribosomal protein S13 N-terminal domainF: Ribosomal_S13_NECOD (1.6)
EA [auth P]Ribosomal_S15_2e7jqcP1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: Ribosomal_S15_2ECOD (1.6)
FA [auth X]Ribosomal_S11e7jqcX1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_S11ECOD (1.6)
GA [auth Y]Ribosomal_S8_N_1e7jqcY1 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: Ribosomal_S8_N_1ECOD (1.6)
GA [auth Y]Ribosomal_S8_C_1e7jqcY2 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: Ribosomal_S8_C_1ECOD (1.6)
HA [auth c]Ribosom_S12_S23e7jqcc1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosom_S12_S23ECOD (1.6)
IA [auth e]Ribosomal_S27ee7jqce1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_S27eECOD (1.6)
K [auth g]Ribosomal_S27e7jqcg1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_S27ECOD (1.6)
L [auth H]Ribosomal_S6ee7jqcH1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: Ribosomal_S6eECOD (1.6)
M [auth h]DUF1899e7jqch1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: DUF1899ECOD (1.6)
P [auth K]S4e7jqcK1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: S4ECOD (1.6)
DA [auth O]Ribosomal_S17_1e7jqcO1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S17_1ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C [auth B]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
C [auth B]PF1612240S ribosomal protein SA C-terminus (40S_SA_C)40S ribosomal protein SA C-terminus- Family
E [auth C]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
F [auth D]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
F [auth D]PF01200Ribosomal protein S28e (Ribosomal_S28e)Ribosomal protein S28e- Family
F [auth D]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
H [auth E]PF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family
H [auth E]PF07650KH domain (KH_2)KH domain- Domain
H [auth E]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
J [auth G]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
J [auth G]PF01599Ribosomal protein S27a (Ribosomal_S27)Ribosomal protein S27aThis family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ...This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis [3]. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [2].
Domain
O [auth J]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
Q [auth L]PF03501Plectin/S10 domain (S10_plectin)Plectin/S10 domainThis presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding.Domain
R [auth N]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
S [auth Q]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
T [auth R]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
V [auth T]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
W [auth U]PF01090Ribosomal protein S19e (Ribosomal_S19e)Ribosomal protein S19e- Family
X [auth V]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
Y [auth W]PF01249Ribosomal protein S21e (Ribosomal_S21e)Ribosomal protein S21e- Family
PF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- Family
CA [auth M]PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
CA [auth M]PF1612140S ribosomal protein S4 C-terminus (40S_S4_C)40S ribosomal protein S4 C-terminus- Family
CA [auth M]PF08071RS4NT (NUC023) domain (RS4NT)RS4NT (NUC023) domainThis is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1].Domain
CA [auth M]PF00467KOW motif (KOW)KOW motif- Family
EA [auth P]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
FA [auth X]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
GA [auth Y]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
L [auth H]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
L [auth H]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
P [auth K]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
P [auth K]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
DA [auth O]PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
DA [auth O]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
rRNA---
B [auth a]eS25
C [auth B]40S ribosomal protein SA
D [auth b]40S ribosomal protein S26
E [auth C]eS1
F [auth D]uS5
G [auth d]eS28
H [auth E]Ribosomal protein S3
I [auth f]eS30
J [auth G]uS7
N [auth I]eS7
O [auth J]eS8
Q [auth L]S10_plectin domain-containing protein -
R [auth N]eS12
S [auth Q]uS19
T [auth R]Uncharacterized protein
U [auth S]eS17
V [auth T]uS13
W [auth U]Uncharacterized protein
X [auth V]uS10
Y [auth W]40S ribosomal protein S21
40S ribosomal protein S24
BA [auth i]Cricket paralysis virus IRES RNA---
CA [auth M]40S ribosomal protein S4
EA [auth P]uS15
FA [auth X]Uncharacterized protein
GA [auth Y]uS8
HA [auth c]Uncharacterized protein
IA [auth e]eS27
K [auth g]eS31
L [auth H]eS6
M [auth h]RACK1
P [auth K]uS4
AA [auth F]Host translation inhibitor nsp1
DA [auth O]uS17

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B [auth a]IPR004977Small ribosomal subunit protein eS25Family
B [auth a]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
C [auth B]IPR032281Small ribosomal subunit protein uS2, C-terminal domainDomain
C [auth B]IPR027504Small ribosomal subunit protein uS2, vertebratesFamily
C [auth B]IPR005707Small ribosomal subunit protein uS2, eukaryotic/archaealFamily
C [auth B]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
C [auth B]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
C [auth B]IPR001865Small ribosomal subunit protein uS2Family
C [auth B]IPR027498Small ribosomal subunit protein uS2, eukaryoticFamily
D [auth b]IPR038551Ribosomal protein eS26 superfamilyHomologous Superfamily
D [auth b]IPR000892Small ribosomal subunit protein eS26Family
D [auth b]IPR047864Ribosomal protein eS26, conserved siteConserved Site
E [auth C]IPR001593Small ribosomal subunit protein eS1Family
E [auth C]IPR018281Small ribosomal subunit protein eS1, conserved siteConserved Site
E [auth C]IPR027500Small ribosomal subunit protein eS1, eukaryotesFamily
F [auth D]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
F [auth D]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
F [auth D]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
F [auth D]IPR000851Small ribosomal subunit protein uS5Family
F [auth D]IPR005711Small ribosomal subunit protein uS5, eukaryotic/archaealFamily
F [auth D]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
F [auth D]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
G [auth d]IPR028626Ribosomal protein eS28 conserved siteConserved Site
G [auth d]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
G [auth d]IPR000289Small ribosomal subunit protein eS28Family
H [auth E]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
H [auth E]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
H [auth E]IPR004044K Homology domain, type 2Domain
H [auth E]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
H [auth E]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
H [auth E]IPR005703Small ribosomal subunit protein uS3, eukaryotic/archaealFamily
H [auth E]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
I [auth f]IPR039415Ubiquitin-like protein FUBIDomain
I [auth f]IPR019956Ubiquitin domainDomain
I [auth f]IPR019954Ubiquitin conserved siteConserved Site
I [auth f]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
I [auth f]IPR000626Ubiquitin-like domainDomain
I [auth f]IPR006846Small ribosomal subunit protein eS30Family
J [auth G]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
J [auth G]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
J [auth G]IPR000235Small ribosomal subunit protein uS7Family
J [auth G]IPR023798Small ribosomal subunit protein uS7 domainDomain
J [auth G]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
N [auth I]IPR000554Small ribosomal subunit protein eS7Family
N [auth I]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
O [auth J]IPR001047Small ribosomal subunit protein eS8Family
O [auth J]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotesHomologous Superfamily
O [auth J]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
O [auth J]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
Q [auth L]IPR037447Small ribosomal subunit protein eS10Family
Q [auth L]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
Q [auth L]IPR005326Plectin/eS10, N-terminalDomain
R [auth N]IPR000530Small ribosomal subunit protein eS12Family
R [auth N]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
R [auth N]IPR047860Small ribosomal subunit protein eS12, conserved siteConserved Site
R [auth N]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
S [auth Q]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
S [auth Q]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
S [auth Q]IPR005713Small ribosomal subunit protein uS19, eukaryotic/archaealFamily
S [auth Q]IPR002222Small ribosomal subunit protein uS19Family
T [auth R]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
T [auth R]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
T [auth R]IPR000754Small ribosomal subunit protein uS9Family
T [auth R]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
U [auth S]IPR036401Small ribosomal subunit protein eS17 superfamilyHomologous Superfamily
U [auth S]IPR001210Small ribosomal subunit protein eS17Family
U [auth S]IPR018273Small ribosomal subunit protein eS17, conserved siteConserved Site
V [auth T]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
V [auth T]IPR001892Small ribosomal subunit protein uS13Family
V [auth T]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
V [auth T]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
W [auth U]IPR001266Small ribosomal subunit protein eS19Family
W [auth U]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
W [auth U]IPR018277Small ribosomal subunit protein eS19, conserved siteConserved Site
W [auth U]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
X [auth V]IPR001848Small ribosomal subunit protein uS10Family
X [auth V]IPR027486Small ribosomal subunit protein uS10 domainDomain
X [auth V]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
X [auth V]IPR005729Small ribosomal subunit protein uS10, eukaryotic/archaealFamily
X [auth V]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
Y [auth W]IPR038579Small ribosomal subunit protein eS21 superfamilyHomologous Superfamily
Y [auth W]IPR018279Small ribosomal subunit protein eS21, conserved siteConserved Site
Y [auth W]IPR001931Small ribosomal subunit protein eS21Family
IPR053709Eukaryotic Ribosomal Protein eS24Homologous Superfamily
IPR001976Small ribosomal subunit protein eS24Family
IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
CA [auth M]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
CA [auth M]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
CA [auth M]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
CA [auth M]IPR002942RNA-binding S4 domainDomain
CA [auth M]IPR013845Small ribosomal subunit protein eS4, central regionDomain
CA [auth M]IPR000876Small ribosomal subunit protein eS4Family
CA [auth M]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
CA [auth M]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
CA [auth M]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
CA [auth M]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
CA [auth M]IPR005824KOWDomain
EA [auth P]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
EA [auth P]IPR000589Small ribosomal subunit protein uS15Family
EA [auth P]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotesFamily
EA [auth P]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
FA [auth X]IPR001971Small ribosomal subunit protein uS11Family
FA [auth X]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
FA [auth X]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
GA [auth Y]IPR000630Small ribosomal subunit protein uS8Family
GA [auth Y]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
GA [auth Y]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
HA [auth c]IPR006032Small ribosomal subunit protein uS12Family
HA [auth c]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
HA [auth c]IPR005680Small ribosomal subunit protein uS12, eukaryotic/archaealFamily
IA [auth e]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
IA [auth e]IPR000592Small ribosomal subunit protein eS27Family
IA [auth e]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
K [auth g]IPR019954Ubiquitin conserved siteConserved Site
K [auth g]IPR050158Ubiquitin and ubiquitin-likeFamily
K [auth g]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
K [auth g]IPR000626Ubiquitin-like domainDomain
K [auth g]IPR038582Small ribosomal subunit protein eS31 eukaryotic-type superfamilyHomologous Superfamily
K [auth g]IPR002906Small ribosomal subunit protein eS31Domain
K [auth g]IPR019956Ubiquitin domainDomain
K [auth g]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
L [auth H]IPR014401Small ribosomal subunit protein eS6-likeFamily
L [auth H]IPR001377Small ribosomal subunit protein eS6Family
L [auth H]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
M [auth h]IPR019775WD40 repeat, conserved siteConserved Site
M [auth h]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
M [auth h]IPR045223Small ribosomal subunit protein RACK1-likeFamily
M [auth h]IPR001680WD40 repeatRepeat
M [auth h]IPR020472G-protein beta WD-40 repeatRepeat
M [auth h]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
P [auth K]IPR002942RNA-binding S4 domainDomain
P [auth K]IPR022801Small ribosomal subunit protein uS4Family
P [auth K]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
P [auth K]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
P [auth K]IPR005710Small ribosomal subunit protein uS4, eukaryotic/archaealFamily
P [auth K]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
AA [auth F]IPR022733DPUP/SUD, C-terminal, betacoronavirusDomain
AA [auth F]IPR042515Non-structural protein NSP15, N-terminal domain superfamily, coronavirusHomologous Superfamily
AA [auth F]IPR043174Non-structural protein NSP15, middle domain superfamilyHomologous Superfamily
AA [auth F]IPR044315Nonstructural protein 14, betacoronavirusDomain
AA [auth F]IPR038123Non-structural protein NSP4, C-terminal superfamily, coronavirusHomologous Superfamily
AA [auth F]IPR042570Non-structural protein NSP3, nucleic acid-binding domain superfamily, betacoronavirusHomologous Superfamily
AA [auth F]IPR043178Papain-like protease, thumb domain superfamily, coronavirusHomologous Superfamily
AA [auth F]IPR046441RNA-dependent RNA polymerase, coronavirusDomain
AA [auth F]IPR044863Nidovirus RdRp-associated nucleotidyl transferase (NiRAN) domainDomain
AA [auth F]IPR044343Nonstructural protein 13, 1B domain, coronavirusDomain
AA [auth F]IPR038166Polyprotein cleavage domain PL2pro superfamily, betacoronavirusHomologous Superfamily
AA [auth F]IPR037227Endoribonuclease EndoU-likeHomologous Superfamily
AA [auth F]IPR027352Nonstructural protein 13, zinc-binding domain, coronavirus-likeDomain
AA [auth F]IPR009003Peptidase S1, PA clanHomologous Superfamily
AA [auth F]IPR013016Peptidase C16, coronavirusDomain
AA [auth F]IPR009466Non-structural protein 14, coronavirusDomain
AA [auth F]IPR044357NSP3, first ubiquitin-like (Ubl) domain, coronavirusDomain
AA [auth F]IPR046436Nidovirus 3'-5' exoribonuclease domainDomain
AA [auth F]IPR047570NSP12, interface domain, coronavirusDomain
AA [auth F]IPR018995RNA synthesis protein NSP10, coronavirusDomain
AA [auth F]IPR043615Nonstructural protein 2, N-terminal domain, coronavirusDomain
AA [auth F]IPR050534Coronaviruses polyprotein 1abFamily
AA [auth F]IPR043177Papain-like protease, N-terminal domain superfamily, coronavirusHomologous Superfamily
AA [auth F]IPR043606Coronavirus replicase NSP15, N-terminal oligomerizationDomain
AA [auth F]IPR044330Nonstructural protein 15, N-terminal domain, alpha/beta-coronavirusDomain
AA [auth F]IPR041679DNA2/NAM7 helicase-like, C-terminalDomain
AA [auth F]IPR024375Non-structural protein NSP3, SUD-M domain, betacoronavirusDomain
AA [auth F]IPR014828Non-structural protein NSP7, coronavirusDomain
AA [auth F]IPR043503Papain-like viral protease, palm and finger domains, coronavirusHomologous Superfamily
AA [auth F]IPR014829Non-structural protein NSP8, coronavirusDomain
AA [auth F]IPR036499Non-structural protein NSP9 superfamily, coronavirusHomologous Superfamily
AA [auth F]IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
AA [auth F]IPR044389Non-structural protein 2, SARS-CoV-likeDomain
AA [auth F]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
AA [auth F]IPR008740Peptidase C30, coronavirusDomain
AA [auth F]IPR036333RNA synthesis protein NSP10 superfamily, coronavirusHomologous Superfamily
AA [auth F]IPR047573Non-structural protein 2, middle domain, coronavirusDomain
AA [auth F]IPR049894Coronavirus NSP3, 3Ecto domainDomain
AA [auth F]IPR043472Macro domain-likeHomologous Superfamily
AA [auth F]IPR043609NendoU domain, nidovirusDomain
AA [auth F]IPR032592Non-structural protein NSP3, nucleic acid-binding domain, betacoronavirusDomain
AA [auth F]IPR043613Non-structural protein 2, C-terminal domain, coronavirusDomain
AA [auth F]IPR038083Non-structural protein NSP3A domain-like superfamilyHomologous Superfamily
AA [auth F]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
AA [auth F]IPR044351RNA-dependent RNA polymerase, SARS-CoV-likeDomain
AA [auth F]IPR024358Non-structural protein NSP3, N-terminal, betacoronavirusDomain
AA [auth F]IPR048673Nonstructural protein 13, stalk domain, coronavirusDomain
AA [auth F]IPR046435NSP14, guanine-N7-methyltransferase domain, coronavirusDomain
AA [auth F]IPR009469RNA-dependent RNA polymerase, N-terminal, coronavirusDomain
AA [auth F]IPR043611Coronavirus replicase NSP3, C-terminalDomain
AA [auth F]IPR044864Non-structural protein NSP3, SUD-N (Mac2) domain, betacoronavirusDomain
AA [auth F]IPR047566Coronavirus replicase NSP3, Y domainDomain
AA [auth F]IPR048672Nonstructural protein 13, zinc-binding domain, coronavirusDomain
AA [auth F]IPR043612Non-structural protein NSP4, N-terminal, coronavirusDomain
AA [auth F]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
AA [auth F]IPR043608Nonstructural protein 15, middle domain, coronavirusDomain
AA [auth F]IPR044353NSP3, second ubiquitin-like (Ubl) domain, coronavirusDomain
AA [auth F]IPR037204Non-structural protein NSP7 superfamily, coronavirusHomologous Superfamily
AA [auth F]IPR046443NSP1, globular domain, alpha/betacoronavirusDomain
AA [auth F]IPR043610Non-structural protein 6, coronavirusDomain
AA [auth F]IPR027351(+) RNA virus helicase core domainDomain
AA [auth F]IPR044322Nonstructural protein 15, middle domain, alpha/betacoronavirusDomain
AA [auth F]IPR009461Non-structural protein NSP16, coronavirus-likeDomain
AA [auth F]IPR043477Peptidase C30, domain 3, coronavirusHomologous Superfamily
AA [auth F]IPR043478Non-structural protein NSP3, SUD-N (Mac2) domain superfamily, betacoronavirusHomologous Superfamily
AA [auth F]IPR038400Non-structural protein NSP3, SUD-M domain superfamily, betacoronavirusHomologous Superfamily
AA [auth F]IPR046442NSP1, C-terminal domain, betacoronavirusDomain
AA [auth F]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
AA [auth F]IPR044401NSP15, NendoU domain, coronavirusDomain
AA [auth F]IPR014822Non-structural protein NSP9, coronavirusDomain
AA [auth F]IPR038030NSP1 globular domain superfamily, betacoronavirusHomologous Superfamily
AA [auth F]IPR021590NSP1, globular domain, betacoronavirusDomain
AA [auth F]IPR044367Non-structural protein 6, betacoronavirusDomain
AA [auth F]IPR037230Non-structural protein NSP8 superfamily, coronavirusHomologous Superfamily
AA [auth F]IPR046440Arterivirus Nsp11 N-terminal/Coronavirus NSP15 middle domainDomain
AA [auth F]IPR032505Non-structural protein NSP4, C-terminal, coronavirusDomain
AA [auth F]IPR046438Nidovirus 2-O-methyltransferaseDomain
AA [auth F]IPR002589Macro domainDomain
AA [auth F]IPR047567Non-structural protein NSP3, group 2-specific marker domain, betacoronavirusDomain
AA [auth F]IPR044371Non-structural protein 3, X-domain-likeDomain
AA [auth F]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
DA [auth O]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
DA [auth O]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
DA [auth O]IPR000266Small ribosomal subunit protein uS17Family
DA [auth O]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
DA [auth O]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily