Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad7k5ya_ All alpha proteins Histone-fold Histone-fold Nucleosome core histones Histone H3 Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ed7k5ye_ All alpha proteins Histone-fold Histone-fold Nucleosome core histones Histone H3 Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Bd7k5yb_ All alpha proteins Histone-fold Histone-fold Nucleosome core histones Histone H4 Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Fd7k5yf_ All alpha proteins Histone-fold Histone-fold Nucleosome core histones Histone H4 Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Cd7k5yc_ All alpha proteins Histone-fold Histone-fold Nucleosome core histones Histone H2A Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Gd7k5yg_ All alpha proteins Histone-fold Histone-fold Nucleosome core histones Histone H2A Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Dd7k5yd_ All alpha proteins Histone-fold Histone-fold Nucleosome core histones automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Hd7k5yh_ All alpha proteins Histone-fold Histone-fold Nucleosome core histones automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
K [auth M]d7k5ym1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
L [auth N]d7k5yn1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
M [auth U]d7k5yu_ All alpha proteins DNA/RNA-binding 3-helical bundle 'Winged helix' DNA-binding domain automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyCore histone-like 8039340 3001387 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyCore histone-like 8039340 3001387 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyCore histone-like 8070545 3001387 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyCore histone-like 8070545 3001387 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyCore histone-like 8039342 3001387 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyCore histone-like 8039342 3001387 SCOP2B (2022-06-29)
M [auth U]SCOP2 FamilyLinker histone H1/H5 globular domain-like 8102133 4000178 SCOP2 (2022-06-29)
M [auth U]SCOP2 SuperfamilyWinged helix DNA-binding domain 8102134 3000034 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AHistonee7k5yA1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: HistoneECOD (1.6)
EHistonee7k5yE1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: HistoneECOD (1.6)
BHistone_1e7k5yB1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: Histone_1ECOD (1.6)
FHistone_1e7k5yF1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: Histone_1ECOD (1.6)
CHistone_1e7k5yC1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: Histone_1ECOD (1.6)
GHistone_1e7k5yG1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: Histone_1ECOD (1.6)
DHistonee7k5yD1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: HistoneECOD (1.6)
HHistonee7k5yH1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: HistoneECOD (1.6)
K [auth M]V-sete7k5yM2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-setECOD (1.6)
K [auth M]V-set_10e7k5yM1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_10ECOD (1.6)
L [auth N]V-sete7k5yN1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-setECOD (1.6)
L [auth N]V-set_10e7k5yN2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_10ECOD (1.6)
M [auth U]Linker_histonee7k5yU1 A: alpha arraysX: HTHH: HTHT: wingedF: Linker_histoneECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B, F
PF15511Centromere kinetochore component CENP-T histone fold (CENP-T_C)Centromere kinetochore component CENP-T histone foldCENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ...CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly associate with CENP-A, but with histone H3 in the centromere region. CENP-T and -W form a hetero-tetramer with CENP-S and -X and bind to a ~100 bp region of nucleosome-free DNA forming a nucleosome-like structure. The DNA-CENP-T-W-S-X complex is likely to be associated with histone H3-containing nucleosomes rather than with CENP-nucleosomes. This domain is the C-terminal histone fold domain of CENP-T, which associates with chromatin [2-3].
Domain
C, G
PF16211C-terminus of histone H2A (Histone_H2A_C)C-terminus of histone H2A- Family
M [auth U]PF00538linker histone H1 and H5 family (Linker_histone)linker histone H1 and H5 familyLinker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures Histone H1 is replaced by histone H5 in some cell types.Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, E
Histone H3.1
B, F
Histone H4
C, G
Histone H2A type 1-B/E
D, H
Histone H2B type 1-J
DNA (197-MER)---
DNA (197-MER)---
K [auth M],
L [auth N]
scFv20---
M [auth U]Histone H1.4

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A, E
PharosP68431
B, F
PharosP62805
C, G
PharosP04908
D, H
PharosP06899
M [auth U]PharosP10412