Experiment: 1DJY

 1DJY

PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C-DELTA1 FROM RAT COMPLEXED WITH INOSITOL-2,4,5-TRISPHOSPHATE


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1ISDPDB ENTRY 1ISD

Crystallization

Crystal Properties
Matthews coefficientSolvent content
4.6270

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 397.13α = 90
b = 397.13β = 90
c = 397.13γ = 90
Symmetry
Space GroupF 41 3 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-rayIMAGE PLATEMARRESEARCH1995-03-28M
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID2ESRFID2

Data Collection

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONDIFFERENCE FOURIERFREE RPDB ENTRY 1ISD2.8105825058250228590.90.210.26SHELLS
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
t_dihedral_angle_d18.476
t_it3.03
t_angle_deg1.583
t_nbd0.097
t_bond_d0.019
t_trig_c_planes0.017
t_gen_planes0.015
t_incorr_chiral_ct
t_pseud_angle
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8522
Nucleic Acid Atoms
Solvent Atoms402
Heterogen Atoms62

Software

Software
Software NamePurpose
CCP4model building
TNTrefinement
MOSFLMdata reduction
CCP4phasing