SOLUTION STRUCTURE OF THE THIRD RNA RECOGNITION MOTIF (RRM) OF U2AF65 IN COMPLEX WITH AN N-TERMINAL SF1 PEPTIDE
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_13C-SEPARATED_NOESY | 1MM 15N,13C U2AF65-RRM3 + 1MM UNLABELED SF1_10-25, 30MM PHOSPHATE BUFFER, 20MM NACL, 3MM DTT | D2O | 50mM SALT | 6.4 | AMBIENT | 295 | |
2 | 3D_ 15N-SEPARATED_NOESY | 1MM 15N,13C U2AF65-RRM3 + 1MM UNLABELED SF1_10-25, 30MM PHOSPHATE BUFFER, 20MM NACL, 3MM DTT | D2O | 50mM SALT | 6.4 | AMBIENT | 295 | |
3 | 3D_13C/15N-EDITED/FILTERED_NOESY | 1MM 15N,13C U2AF65-RRM3 + 1MM UNLABELED SF1_10-25, 30MM PHOSPHATE BUFFER, 20MM NACL, 3MM DTT | D2O | 50mM SALT | 6.4 | AMBIENT | 295 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 600 |
2 | Bruker | DRX | 500 |
3 | Bruker | DRX | 800 |
NMR Refinement | ||
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Method | Details | Software |
RESTRAINED MOLECULAR DYNAMICS USING CNS AND ARIA FOR AMBIGUOUS DISTANCE RESTRAINTS | REFINEMENT OF PROTEIN STRUCTURES IN WATER SOLVENT, ACCORDING TO LINGE ET AL. (PROTEINS 50:496 -506, 2003) | CNS |
NMR Ensemble Information | |
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Conformer Selection Criteria | STRUCTURES WITH THE LEAST RESTRAINT VIOLATIONS, STRUCTURES WITH THE LOWEST ENERGY |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | CNS | 1.1 | BRUNGER |
2 | refinement | ARIA | 1.2 | NILGES |