X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1V3V1V3V.pdb

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP8.5293PEG3350, NaI, ethylene glycol, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.856.4

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 92.543α = 90
b = 92.543β = 90
c = 202.77γ = 90
Symmetry
Space GroupP 43

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCD2005-05-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SA0.98402SLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.367.5799.40.1397494474944
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.32.4297.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1V3V.pdb2.362.37230272302192098.420.19690.19690.195110.24933RANDOM43.497
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.55-0.551.11
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.289
r_dihedral_angle_3_deg16.573
r_dihedral_angle_4_deg15.973
r_dihedral_angle_1_deg7.384
r_scangle_it7.035
r_scbond_it5.181
r_mcangle_it2.905
r_mcbond_it1.991
r_angle_refined_deg1.618
r_angle_other_deg0.843
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.289
r_dihedral_angle_3_deg16.573
r_dihedral_angle_4_deg15.973
r_dihedral_angle_1_deg7.384
r_scangle_it7.035
r_scbond_it5.181
r_mcangle_it2.905
r_mcbond_it1.991
r_angle_refined_deg1.618
r_angle_other_deg0.843
r_mcbond_other0.523
r_nbd_refined0.19
r_nbtor_refined0.175
r_nbd_other0.169
r_symmetry_vdw_other0.159
r_xyhbond_nbd_refined0.156
r_symmetry_vdw_refined0.152
r_chiral_restr0.088
r_nbtor_other0.088
r_bond_refined_d0.017
r_gen_planes_refined0.005
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms9834
Nucleic Acid Atoms
Solvent Atoms315
Heterogen Atoms22

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
CCP4data scaling
PHASERphasing