2AE0

Crystal structure of MltA from Escherichia coli reveals a unique lytic transglycosylase fold


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.2280PEG 8000, sodium chloride, sodium acetate, pH 4.2, VAPOR DIFFUSION, HANGING DROP, temperature 280K
Crystal Properties
Matthews coefficientSolvent content
4.4772.47

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 103.873α = 90
b = 103.873β = 90
c = 109.777γ = 120
Symmetry
Space GroupP 31 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42002-09-23MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-10.934, 0.9794, 0.9792, 0.9393ESRFID14-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12301000.04946854468542
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.071001000.501

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT2304685446646238899.980.2050.2050.2030.237RANDOM37.227
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.71.352.7-4.04
RMS Deviations
KeyRefinement Restraint Deviation
r_scangle_it7.786
r_scbond_it5.261
r_mcangle_it3.165
r_mcbond_it2.051
r_dihedral_angle_1_deg1.406
r_angle_refined_deg1.124
r_nbd_refined0.18
r_symmetry_vdw_refined0.176
r_xyhbond_nbd_refined0.13
r_chiral_restr0.102
RMS Deviations
KeyRefinement Restraint Deviation
r_scangle_it7.786
r_scbond_it5.261
r_mcangle_it3.165
r_mcbond_it2.051
r_dihedral_angle_1_deg1.406
r_angle_refined_deg1.124
r_nbd_refined0.18
r_symmetry_vdw_refined0.176
r_xyhbond_nbd_refined0.13
r_chiral_restr0.102
r_symmetry_hbond_refined0.081
r_bond_refined_d0.004
r_gen_planes_refined0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2637
Nucleic Acid Atoms
Solvent Atoms278
Heterogen Atoms8

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
SnBphasing
SOLVEphasing
RESOLVEphasing