X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP829122%PEG 4000, 20mM tris-HCl, pH = 8.0 and 100mM CaCl2, VAPOR DIFFUSION, SITTING DROP, temperature 291.0K
Crystal Properties
Matthews coefficientSolvent content
2.1542.88

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 35.211α = 90
b = 70.026β = 90
c = 130.366γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCHMSINGLE WAVELENGTH
21IMAGE PLATEMAR scanner 345 mm plate
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SA0.931SLSX10SA
2SYNCHROTRONEMBL/DESY, HAMBURG BEAMLINE X310.976EMBL/DESY, HAMBURGX31

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.717.9898.343466111
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.71.74498.34

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.717.9834661111598.340.225840.224240.27544RANDOM28.529
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.01-0.040.03
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.621
r_dihedral_angle_4_deg20.164
r_dihedral_angle_3_deg16.666
r_dihedral_angle_1_deg7.949
r_scangle_it3.639
r_scbond_it2.6
r_mcangle_it1.804
r_angle_refined_deg1.784
r_mcbond_it1.099
r_nbtor_refined0.314
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.621
r_dihedral_angle_4_deg20.164
r_dihedral_angle_3_deg16.666
r_dihedral_angle_1_deg7.949
r_scangle_it3.639
r_scbond_it2.6
r_mcangle_it1.804
r_angle_refined_deg1.784
r_mcbond_it1.099
r_nbtor_refined0.314
r_nbd_refined0.31
r_symmetry_vdw_refined0.239
r_symmetry_hbond_refined0.197
r_xyhbond_nbd_refined0.193
r_metal_ion_refined0.167
r_chiral_restr0.12
r_bond_refined_d0.016
r_gen_planes_refined0.007
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2437
Nucleic Acid Atoms
Solvent Atoms301
Heterogen Atoms1

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
SHARPphasing