2IEJ

Human Protein Farnesyltransferase Complexed with Inhibitor Compound STN-48 And FPP Analog at 1.8A Resolution


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.2crystallized via hanging drop against well solution containing 300 mM ammonium acetate pH 5.2, 12% PEG 8K , VAPOR DIFFUSION, HANGING DROP
Crystal Properties
Matthews coefficientSolvent content
3.1861.29

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 178.253α = 90
b = 178.253β = 90
c = 64.661γ = 120
Symmetry
Space GroupP 61

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCDmirrors2006-04-08MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 22-BM1.00APS22-BM

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.85097.60.04122.7210753729.748
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.81.988.70.2713.714360

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.833.6910753753761000.1650.1630.188RANDOM24.827
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.465
r_dihedral_angle_4_deg17.43
r_dihedral_angle_3_deg13.237
r_dihedral_angle_1_deg5.095
r_scangle_it3.609
r_scbond_it2.269
r_mcangle_it1.455
r_angle_refined_deg1.294
r_mcbond_it0.93
r_nbtor_refined0.307
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.465
r_dihedral_angle_4_deg17.43
r_dihedral_angle_3_deg13.237
r_dihedral_angle_1_deg5.095
r_scangle_it3.609
r_scbond_it2.269
r_mcangle_it1.455
r_angle_refined_deg1.294
r_mcbond_it0.93
r_nbtor_refined0.307
r_nbd_refined0.197
r_symmetry_vdw_refined0.187
r_symmetry_hbond_refined0.17
r_xyhbond_nbd_refined0.139
r_chiral_restr0.091
r_metal_ion_refined0.035
r_bond_refined_d0.012
r_gen_planes_refined0.006
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5917
Nucleic Acid Atoms
Solvent Atoms708
Heterogen Atoms106

Software

Software
Software NamePurpose
XSCALEdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction
MOLREPphasing