X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1hanging drop7.5298PEG4000 MPD MgCl NH2SO4, pH 7.5, hanging drop, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.2545.38

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 52.36α = 90
b = 148.65β = 90
c = 79.52γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray113IMAGE PLATERIGAKU RAXIS IV++2007-05-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.719.8895.30.05711.53.9432932
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.71.7698.90.313.33.63354

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.719.8832932167095.210.1950.1930.217RANDOM20.014
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.260.240.02
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.16
r_dihedral_angle_4_deg14.836
r_dihedral_angle_3_deg12.553
r_dihedral_angle_1_deg6.134
r_scangle_it3.123
r_scbond_it2.042
r_angle_refined_deg1.434
r_mcangle_it1.284
r_mcbond_it0.871
r_nbtor_refined0.308
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.16
r_dihedral_angle_4_deg14.836
r_dihedral_angle_3_deg12.553
r_dihedral_angle_1_deg6.134
r_scangle_it3.123
r_scbond_it2.042
r_angle_refined_deg1.434
r_mcangle_it1.284
r_mcbond_it0.871
r_nbtor_refined0.308
r_nbd_refined0.211
r_symmetry_vdw_refined0.178
r_symmetry_hbond_refined0.155
r_xyhbond_nbd_refined0.095
r_chiral_restr0.094
r_bond_refined_d0.014
r_gen_planes_refined0.006
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2404
Nucleic Acid Atoms
Solvent Atoms194
Heterogen Atoms64

Software

Software
Software NamePurpose
d*TREKdata scaling
MOLREPphasing
REFMACrefinement
PDB_EXTRACTdata extraction
d*TREKdata reduction