2RSC
Solution Structure of the bombyx mori lysozyme
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D 1H-13C NOESY | 20 mM sodium acetate-1, 100 mM sodium chloride-2, 0.02 % sodium azide-3 | 90% H2O/10% D2O | 120 | 3.8 | ambient | 298 | |
2 | 3D 1H-15N NOESY | 20 mM sodium acetate-1, 100 mM sodium chloride-2, 0.02 % sodium azide-3 | 90% H2O/10% D2O | 120 | 3.8 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics, DGSA-distance geometry simulated annealing | Amber |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | Amber | Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm | |
2 | collection | TopSpin | Bruker Biospin | |
3 | structure solution | CYANA | Guntert, Mumenthaler and Wuthrich | |
4 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
5 | data analysis | NMRView | Johnson, One Moon Scientific | |
6 | data analysis | KUJIRA | Kobayashi, N. | |
7 | refinement | CYANA | Guntert, Mumenthaler and Wuthrich | |
8 | refinement | Amber | Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm |