2X3G

Crystal Structure of the hypothetical protein ORF119 from Sulfolobus islandicus rod-shaped virus 1


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1620% PEG 4000, 0.1 M SODIUM CITRATE PH 6.0. CRYSTALS WERE CRYOPROTECTED WITH 25% PEG400 IN A SOLUTION CONTAINING 22% PEG 4000, 0.1 M SODIUM CITRATE PH 6.0.
Crystal Properties
Matthews coefficientSolvent content
2.3147

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 73.38α = 90
b = 46.17β = 101.83
c = 40.02γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCHMIRRORS2008-02-21MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE BM14ESRFBM14

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.838.841000.0815.86.511671
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.81.851000.543.86.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUTNONE1.838.841167159299.970.195870.193550.23786RANDOM21.839
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.94-1.61-1.58-2.02
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.144
r_dihedral_angle_4_deg18.274
r_dihedral_angle_3_deg15.119
r_dihedral_angle_1_deg6.357
r_scangle_it2.445
r_scbond_it1.988
r_angle_refined_deg1.183
r_mcangle_it1.131
r_mcbond_it0.922
r_angle_other_deg0.758
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.144
r_dihedral_angle_4_deg18.274
r_dihedral_angle_3_deg15.119
r_dihedral_angle_1_deg6.357
r_scangle_it2.445
r_scbond_it1.988
r_angle_refined_deg1.183
r_mcangle_it1.131
r_mcbond_it0.922
r_angle_other_deg0.758
r_nbd_refined0.208
r_symmetry_vdw_other0.2
r_nbtor_refined0.192
r_nbd_other0.175
r_mcbond_other0.169
r_symmetry_hbond_refined0.151
r_xyhbond_nbd_refined0.14
r_symmetry_vdw_refined0.106
r_nbtor_other0.083
r_chiral_restr0.069
r_bond_refined_d0.01
r_gen_planes_refined0.004
r_bond_other_d0.002
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms992
Nucleic Acid Atoms
Solvent Atoms88
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
SCALEPACKdata scaling
SHELXDphasing