X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP82906.5 MG/ML PROTEIN WAS CRYSTALLIZED BY HANGING DROP VAPOR DIFFUSION IN 0.1 M TRIS-HCL (PH 8.0), 1.95 M NH4H2PO4 AT 17 DEGREES C.
Crystal Properties
Matthews coefficientSolvent content
3.362.4

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 48.573α = 90
b = 83.317β = 90
c = 89.501γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 4MIRRORS2004-04-27MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X9BNSLSX9B

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.43099.90.07225.1149113
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.42.491000.2655.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.3929.811406775899.30.210.2080.24RANDOM28.3
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.610.13-0.74
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.727
r_dihedral_angle_3_deg14.992
r_dihedral_angle_4_deg14.28
r_dihedral_angle_1_deg6.26
r_scangle_it3.142
r_scbond_it2.048
r_mcangle_it1.393
r_angle_refined_deg1.352
r_mcbond_it1.052
r_angle_other_deg0.83
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.727
r_dihedral_angle_3_deg14.992
r_dihedral_angle_4_deg14.28
r_dihedral_angle_1_deg6.26
r_scangle_it3.142
r_scbond_it2.048
r_mcangle_it1.393
r_angle_refined_deg1.352
r_mcbond_it1.052
r_angle_other_deg0.83
r_symmetry_vdw_refined0.356
r_nbd_refined0.193
r_nbd_other0.185
r_symmetry_vdw_other0.181
r_nbtor_refined0.171
r_xyhbond_nbd_refined0.147
r_symmetry_hbond_refined0.12
r_nbtor_other0.086
r_chiral_restr0.074
r_bond_refined_d0.014
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1878
Nucleic Acid Atoms
Solvent Atoms72
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
SOLVEphasing