X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2VNVPDB ENTRY 2VNV

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1COMPLEX WAS CO-CRYSTALLIZED FROM 30% W/V PEG 5000MME AND 0.2M AMMONIUM SULPHATE
Crystal Properties
Matthews coefficientSolvent content
1.9436.65

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 57.958α = 90
b = 48.974β = 98.89
c = 76.261γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCDTOROIDAL MIRROR2006-06-18MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID29ESRFID29

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7575.3897.80.0811.23.4428841.9
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.751.8486.70.351.92.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2VNV1.7575.3839781212097.710.178750.17620.22548RANDOM12.515
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.08-0.070.02-0.11
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.141
r_dihedral_angle_4_deg17.047
r_dihedral_angle_3_deg14.743
r_dihedral_angle_1_deg7.155
r_scangle_it4.027
r_scbond_it2.579
r_mcangle_it1.766
r_angle_refined_deg1.742
r_angle_other_deg1.328
r_mcbond_it0.993
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.141
r_dihedral_angle_4_deg17.047
r_dihedral_angle_3_deg14.743
r_dihedral_angle_1_deg7.155
r_scangle_it4.027
r_scbond_it2.579
r_mcangle_it1.766
r_angle_refined_deg1.742
r_angle_other_deg1.328
r_mcbond_it0.993
r_mcbond_other0.288
r_chiral_restr0.118
r_bond_refined_d0.017
r_gen_planes_refined0.007
r_bond_other_d0.004
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3720
Nucleic Acid Atoms
Solvent Atoms463
Heterogen Atoms101

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
MOLREPphasing