X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1E8ZPDB ENTRY 1e8z

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION7.528817% PEG 4000, 0.25M ammonium sulphate, 0.1M Tris pH 7.5, VAPOR DIFFUSION, temperature 288K
Crystal Properties
Matthews coefficientSolvent content
2.3748.07

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 144.302α = 90
b = 68.244β = 95.19
c = 106.069γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 4Torroidal Mirror2005-01-05MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-40.9793ESRFID14-4

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.462.1499.30.076.83.7401494014951.2
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.42.5399.30.360.3623.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1e8z2.457.0740148163699.280.2290.2270.276RANDOM26.414
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.591.442.86-2.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg7.023
r_scangle_it2.586
r_scbond_it1.582
r_angle_refined_deg1.501
r_mcangle_it0.939
r_angle_other_deg0.892
r_mcbond_it0.512
r_symmetry_vdw_refined0.28
r_nbd_other0.224
r_symmetry_vdw_other0.219
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg7.023
r_scangle_it2.586
r_scbond_it1.582
r_angle_refined_deg1.501
r_mcangle_it0.939
r_angle_other_deg0.892
r_mcbond_it0.512
r_symmetry_vdw_refined0.28
r_nbd_other0.224
r_symmetry_vdw_other0.219
r_nbd_refined0.211
r_xyhbond_nbd_refined0.197
r_symmetry_hbond_refined0.098
r_nbtor_other0.089
r_chiral_restr0.086
r_bond_refined_d0.016
r_gen_planes_refined0.006
r_gen_planes_other0.006
r_bond_other_d0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6845
Nucleic Acid Atoms
Solvent Atoms38
Heterogen Atoms21

Software

Software
Software NamePurpose
MOSFLMdata reduction
SCALAdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
ADSCdata collection
AMoREphasing