X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP277VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.6253.06

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 66.616α = 90
b = 66.616β = 90
c = 153.969γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELPSI PILATUS 6MMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SA1.000SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.4598.30.09414942-342.73
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.452.5898.60.5685.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT2.4546.18149423741000.1840.1830.226RANDOM37.586
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.351.172.35-3.52
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.442
r_dihedral_angle_4_deg18.317
r_dihedral_angle_3_deg15.825
r_dihedral_angle_1_deg5.862
r_scangle_it5.285
r_scbond_it3.779
r_mcangle_it2.353
r_mcbond_it1.85
r_angle_refined_deg1.222
r_angle_other_deg0.767
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.442
r_dihedral_angle_4_deg18.317
r_dihedral_angle_3_deg15.825
r_dihedral_angle_1_deg5.862
r_scangle_it5.285
r_scbond_it3.779
r_mcangle_it2.353
r_mcbond_it1.85
r_angle_refined_deg1.222
r_angle_other_deg0.767
r_mcbond_other0.385
r_symmetry_vdw_other0.227
r_nbd_refined0.201
r_symmetry_hbond_refined0.194
r_nbd_other0.189
r_nbtor_refined0.18
r_xyhbond_nbd_refined0.135
r_nbtor_other0.084
r_symmetry_vdw_refined0.083
r_chiral_restr0.072
r_metal_ion_refined0.031
r_bond_refined_d0.009
r_gen_planes_refined0.004
r_gen_planes_other0.003
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2373
Nucleic Acid Atoms
Solvent Atoms74
Heterogen Atoms83

Software

Software
Software NamePurpose
XSCALEdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
MOLREPphasing