X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1TQN 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP8.528015% PEG 3350, 0.1M Tris-HCl, 0.2 M potassium thiocyanate, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 280K
Crystal Properties
Matthews coefficientSolvent content
3.0259.31

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 182.609α = 90
b = 81.647β = 122.89
c = 108.699γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELPSI PILATUS 6M2008-03-27MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL12-20.97946SSRLBL12-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.391.2998.80.150.1515.610.158240
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.32.4298.20.560.5984.18

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1TQN2.5305824043128228797.440.208660.206360.25154RANDOM36.342
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.121.411.07-0.66
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.71
r_dihedral_angle_4_deg20.802
r_dihedral_angle_3_deg19.209
r_dihedral_angle_1_deg5.002
r_scangle_it2.627
r_scbond_it1.519
r_mcangle_it1.182
r_angle_refined_deg1.136
r_mcbond_it0.608
r_chiral_restr0.095
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.71
r_dihedral_angle_4_deg20.802
r_dihedral_angle_3_deg19.209
r_dihedral_angle_1_deg5.002
r_scangle_it2.627
r_scbond_it1.519
r_mcangle_it1.182
r_angle_refined_deg1.136
r_mcbond_it0.608
r_chiral_restr0.095
r_bond_refined_d0.009
r_gen_planes_refined0.003
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7594
Nucleic Acid Atoms
Solvent Atoms265
Heterogen Atoms298

Software

Software
Software NamePurpose
REFMACrefinement
PHASERphasing
CNSrefinement
MOSFLMdata reduction
SCALAdata scaling
Blu-Icedata collection