3C6O

Small molecule agonists and antagonists of F-box protein-substrate interactions in auxin perception and signaling


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1P1M 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1627712-14% PEG 40,000, 100mM BTP pH6.0, 200mM NaCl, EVAPORATION, temperature 277K, pH 6.00
Crystal Properties
Matthews coefficientSolvent content
5.8879.08

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 102.264α = 90
b = 80.836β = 104.87
c = 124.748γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11neutron100CCDADSC QUANTUM 3152007-07-21LLAUE
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 5.0.2ALS5.0.2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.75075238412
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.795

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1P1M2.749.424688323841123246.10.1870.1830.272RANDOM40.34
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.330.41.44-3.57
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.979
r_dihedral_angle_3_deg20.972
r_dihedral_angle_4_deg20.832
r_dihedral_angle_1_deg7.708
r_scangle_it4.558
r_scbond_it2.792
r_angle_refined_deg2.767
r_mcangle_it1.683
r_mcbond_it0.981
r_nbtor_refined0.333
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.979
r_dihedral_angle_3_deg20.972
r_dihedral_angle_4_deg20.832
r_dihedral_angle_1_deg7.708
r_scangle_it4.558
r_scbond_it2.792
r_angle_refined_deg2.767
r_mcangle_it1.683
r_mcbond_it0.981
r_nbtor_refined0.333
r_nbd_refined0.283
r_xyhbond_nbd_refined0.207
r_chiral_restr0.182
r_symmetry_vdw_refined0.161
r_bond_refined_d0.024
r_gen_planes_refined0.007
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5079
Nucleic Acid Atoms
Solvent Atoms226
Heterogen Atoms53

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
PHASERphasing