4C80

Aldehyde Oxidoreductase from Desulfovibrio gigas (MOP), soaked with hydrogen peroxide

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	1VLB	PDB ENTRY 1VLB

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	7.6	277	VAPOR DIFFUSION, SITTING DROP, AT 277 K. CRYSTALLIZED USING 30% ISOPROPANOL, 0.2M MGCL2, 0.2M HEPES PH 7.6. ISOPROPANOL WAS REMOVED AND CRYSTAL WAS SOAKED WITH 50UM HYDROGEN PEROXYDE FOR 1H.

Crystal Properties
Matthews coefficient	Solvent content
2.47	50

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 143.057	α = 90
b = 143.057	β = 90
c = 162.292	γ = 120

Symmetry
Space Group	P 61 2 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	77	PIXEL	DECTRIS PILATUS 6M		2011-11-21	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ESRF BEAMLINE ID29		ESRF	ID29

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.5	49.58	99.9	0.06	20.5	9.3		155276		2

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.5	1.58	100		0.35	6	9.5

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	PDB ENTRY 1VLB	1.5	123.89	147396	7792	99.91	0.10479	0.10325	0.13362	RANDOM	15.375

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
					0.01

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	35.277
r_sphericity_free	28.664
r_dihedral_angle_4_deg	16.366
r_dihedral_angle_3_deg	10.914
r_sphericity_bonded	8.468
r_dihedral_angle_1_deg	6.398
r_long_range_B_refined	3.236
r_long_range_B_other	2.547
r_rigid_bond_restr	1.973
r_scangle_other	1.771
r_angle_refined_deg	1.628
r_scbond_it	1.503
r_scbond_other	1.503
r_mcangle_it	1.397
r_mcangle_other	1.397
r_mcbond_it	1.046
r_mcbond_other	1.045
r_angle_other_deg	0.847
r_chiral_restr	0.089
r_gen_planes_other	0.021
r_bond_other_d	0.018
r_bond_refined_d	0.01
r_gen_planes_refined	0.01
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	6815
Nucleic Acid Atoms
Solvent Atoms	1100
Heterogen Atoms	73

Software

Software
Software Name	Purpose
REFMAC	refinement
MOSFLM	data reduction
SCALA	data scaling
PHASER	phasing