X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.829320 MM MGAC2, 13% MPD, PH 6.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K
Crystal Properties
Matthews coefficientSolvent content
3.6766.52

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 136.52α = 90
b = 300.75β = 113.24
c = 145.35γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELPSI PILATUS 6M2012-05-13MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SA1.0SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.83097.70.06116.326377925771322
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.82.998.90.4273.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1RYP2.8152577132448271288697.830.2040.201180.199390.23547RANDOM62.298
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
3.42-1.23-5.61.98
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.122
r_sphericity_free29.549
r_sphericity_bonded17.44
r_dihedral_angle_3_deg14.05
r_dihedral_angle_4_deg13.503
r_dihedral_angle_1_deg5.063
r_long_range_B_refined4.52
r_long_range_B_other4.517
r_mcangle_it3.964
r_mcangle_other3.963
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.122
r_sphericity_free29.549
r_sphericity_bonded17.44
r_dihedral_angle_3_deg14.05
r_dihedral_angle_4_deg13.503
r_dihedral_angle_1_deg5.063
r_long_range_B_refined4.52
r_long_range_B_other4.517
r_mcangle_it3.964
r_mcangle_other3.963
r_scangle_other3.564
r_mcbond_it2.954
r_mcbond_other2.954
r_scbond_it2.789
r_scbond_other2.789
r_rigid_bond_restr1.072
r_angle_refined_deg0.868
r_angle_other_deg0.719
r_chiral_restr0.049
r_bond_refined_d0.004
r_gen_planes_refined0.003
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms49370
Nucleic Acid Atoms
Solvent Atoms367
Heterogen Atoms180

Software

Software
Software NamePurpose
XDSdata scaling
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
REFMACphasing